Scaffold Ga0114340_1007603

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1007603
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5573
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002071	Metagenome / Metatranscriptome	596	Y
F003663	Metagenome / Metatranscriptome	474	Y
F005177	Metagenome / Metatranscriptome	409	Y
F049621	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100760311	F005177	AGGA	MKNRYRVEIYDENKANDLTIYSEQGVDKEYLTELVFSNLRKFDGTIRAYVFDSLKKKKTTALILNRECLPPKTELTNLLK*
Ga0114340_10076034	F049621	AGGAG	MADLKYFNALMNSVVGDDEQRKAAKEYLAEVDPEVWGDSPD*
Ga0114340_10076036	F003663	AGG	MLSTAIEILDATKGSIFDEDIMGLAGELHTRRNELSDEIFAKYLFMYSAALSSKVADSITKILLTEQEMSDLVATIDEMDNLSETILEENE*
Ga0114340_10076038	F002071	AGG	MTTLEIGQTITTAKSGVVGVIKAVDNHPSGVARVLLDVNGSERWTSVAN*