Scaffold Ga0114340_1005494

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1005494
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8091
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (20.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011488	Metagenome / Metatranscriptome	290	Y
F018910	Metagenome / Metatranscriptome	232	Y
F033041	Metagenome / Metatranscriptome	178	Y
F082677	Metagenome / Metatranscriptome	113	Y
F092059	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100549418	F018910	N/A	MKNLITEEFKEKFKAAFTRFMNITIVASTLIAGFGLGYYFNELKMKPKAVNETILNKEVRIAIDSEDKLIMMDRKTGSYTIYSDSVGRIIFKMYASKIASPVVTK*
Ga0114340_10054942	F092059	AGG	MWLQNNFNLVMIAGLTLIIGLSVGEARKTHKEIKKGEAQWLLKKKKK*
Ga0114340_10054944	F011488	N/A	MTNNELIEELYHKAHAKGFFHELHDKVKELKQDGKARCEHRLVQKAYSELKKIKLARPSHQN*
Ga0114340_10054948	F033041	N/A	MEKIKINPNFKFTFDTDVDLRRAELSGYIESYDMVRICVKRLDNGNQVDFPIKTREDYFETVASLNERANEFDMVEIYQDTHMFDMYDYI*
Ga0114340_10054949	F082677	N/A	MKQEDKFNGLSKGQVKQIIRRNMITRVKSSKKVYDRKKEKRGLAFGD*