Scaffold Ga0114340_1005235

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1005235
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6928
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025215	Metagenome	202	Y
F064418	Metagenome / Metatranscriptome	128	N
F070030	Metagenome / Metatranscriptome	123	Y
F095175	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100523512	F064418	N/A	VYEELLMGKPRPTEIKLVAKLLDPDAENSEDAAELATEIIEALDKSRLKRESFIVVAKLADWVPVQAWGEFNTRLQAEKFFPNLSSPDTGGKGSIVRLENPDDLLKRIGAIK*
Ga0114340_100523513	F070030	AGGAG	MIYLTSVTLICSYCNAEIERRTEREAQEALAYHQKYVQCMKNY*
Ga0114340_100523518	F025215	N/A	MKLKVHDPSGQAIADVYEYEAGALLMSLYGNGSTIRYKNVILWLEGADGEGAQSYDNTAFIVDERLKKAIASERLKKAGVFQ*
Ga0114340_10052353	F095175	N/A	MTTIIGIQKADYCVIAADSRTTTEKGRPYSHPIITKITKRGKYLIAGAGTTMPCDTIQHIWKPPALPPSIKDQYHFMITDIVPSMRESLKDNGWVPDDKSEDYEFLFLIAVNGIIYEIDDTFSVFLRDDGVYGIGSGSSYAVGAIQQGATWRKALQIAAKNDVYTAPPFIMHRQEKK*