Scaffold Ga0114340_1003631

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1003631
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11570
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (23.53%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035632	Metagenome / Metatranscriptome	171	Y
F075718	Metagenome	118	Y
F088308	Metagenome	109	N
F095001	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100363114	F095001	N/A	MRVAIDMKGVYGTYYTRIKEFKNESHLDNWCAWMHKNQNRVKIIGTTIL*
Ga0114340_100363122	F088308	GGA	MQIILFILLLWGSEKKVIIQEADKVEGRQTYHVKVGKKTYEYMYAEEIANSLKTGVWEYNEDLK*
Ga0114340_100363124	F075718	N/A	MKAFEINTTAWDEENFTLFTDLTGIQIIDVITPIVMRERKFGEEYTNDDLIDALIEAYPSNKVYAYQNNNILISI*
Ga0114340_10036313	F035632	N/A	LGKPKPKNKMEKFLSIPVTNEQRQLLSATGIVLIVQASTTTVTVHYKSSTGTDVVTITHATAGAGDETMRDAIQSAVVAALGTSWTYVAYEVNNLPYAVSGIAIA*