Basic Information | |
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Taxon OID | 3300008107 Open in IMG/M |
Scaffold ID | Ga0114340_1003631 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11570 |
Total Scaffold Genes | 34 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (23.53%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4.9 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F035632 | Metagenome / Metatranscriptome | 171 | Y |
F075718 | Metagenome | 118 | Y |
F088308 | Metagenome | 109 | N |
F095001 | Metagenome | 105 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114340_100363114 | F095001 | N/A | MRVAIDMKGVYGTYYTRIKEFKNESHLDNWCAWMHKNQNRVKIIGTTIL* |
Ga0114340_100363122 | F088308 | GGA | MQIILFILLLWGSEKKVIIQEADKVEGRQTYHVKVGKKTYEYMYAEEIANSLKTGVWEYNEDLK* |
Ga0114340_100363124 | F075718 | N/A | MKAFEINTTAWDEENFTLFTDLTGIQIIDVITPIVMRERKFGEEYTNDDLIDALIEAYPSNKVYAYQNNNILISI* |
Ga0114340_10036313 | F035632 | N/A | LGKPKPKNKMEKFLSIPVTNEQRQLLSATGIVLIVQASTTTVTVHYKSSTGTDVVTITHATAGAGDETMRDAIQSAVVAALGTSWTYVAYEVNNLPYAVSGIAIA* |
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