Scaffold Ga0114340_1003299

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1003299
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10419
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (62.07%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F012975	Metagenome / Metatranscriptome	275	Y
F026561	Metagenome / Metatranscriptome	197	Y
F028150	Metagenome / Metatranscriptome	192	Y
F037227	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100329913	F037227	N/A	MANMTVLEGIIEDVATELYQKWYNAIAIEDRTEEYSKALGLNAHETTFFVIQSFMNKFNEAAEELKDK*
Ga0114340_100329920	F000473	N/A	MENNHFKYGVNEWTGEPNKPVFYTKDMALKIRELKKPVYDLMVDIVQYPEFLAIRLYEDNFIQYDGVKKEMVIDYVNKVKKLIESYGVRCELEGQPSERIL*
Ga0114340_100329922	F012975	AGGA	MLNLTLKGVEVFIEKFKSKNEEPFWNNYDLVIWKKDIGGYTSIKGLFRKDQWGTAETISVDDKGIWKLPIKYVKHFK*
Ga0114340_100329928	F028150	AGGAGG	MNWLKKRIMAMLSENFTFLGFFVAWVVLEGSAKVVVGYMTLLSVAIWFLTIGIREKAEKDSE*
Ga0114340_10032996	F026561	AGGA	MSDDGTGMTPPPNPTASGAVTSSEATRKYPKQGLRTGLKVDRNKHGIRRETSLGPKPPKKTGRKKV*