Scaffold Ga0114340_1003035

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1003035
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37140
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (85.71%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001599	Metagenome / Metatranscriptome	665	Y
F001706	Metagenome / Metatranscriptome	648	Y
F002301	Metagenome / Metatranscriptome	573	Y
F006544	Metagenome / Metatranscriptome	370	Y
F068745	Metagenome	124	Y
F082599	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100303518	F002301	GAGG	VDYLDEYEQMVVAIAAEYQRKYPMTDQQDIQQVLWIWFVTHPVKYKEWSALPQKDKDKLIAKSLRNKAITYCEREKARTVGYELLDLYYYDASVIEAFLPSIIAESYEIPSKIKDLNFKFSKGESTDTNNWLVLRSDIASAYYRLSEAKQFILKTRFSTESCEWSKLGEELKTTPDGARMKVQRAISSLIRNLGGHRPYLEEDSSIEVEDDESGE*
Ga0114340_10030353	F082599	AGGAG	MSYTVHEIADLNESIDTAIASIKKANAILEEMMATGRIYVEEE*
Ga0114340_100303534	F001599	AGG	MQETISIAWCDNGNVDGKFMQGVADVLLKSGITFETSLRSQGNQIARQREKVINYWYDQNKSDWLLWVDSDVVISVDKFKLLWDNKDANERPIVTGVYFTTDNPEDPLMIPMPTVYEFGEADGVVGIQRIHPLPENKFIKVGAAGMGFVLMHRNAVTKIKEVLPDAPFFTEVGVGNTFMGEDIYFFAVCDKAEVPVWCHTGATVPHMKRFSFDEHYYKAFFGAVEKPSNLILPKHHRKR*
Ga0114340_100303541	F001706	N/A	MSLHRKQTHPEYVEGCFGCKVLTLELGVGDAARDIPDKKWNAELQAYRDARAQGIQPSGTRMQDIEAAHTASETLGKAYDADTMPKAKDINKKTAEVMKEIGQI*
Ga0114340_100303552	F006544	AGGAGG	MTTLVAIQGNGWAAVGCDSRSSGDDGRLMQLATHKIIENNGILIAGSGASRGSNILQFGWKAPKPRATDDLDVFMTQTFIPQMRKVFMDSGYDMKEDGDAAAHDSQFLVVVRGVIYPVFEDYSWDRDTRGIYCSGSGADIALGAIEAFAGSRKSFTPKVAELDIRMAINIASRWDIHTAEPVVVKIQHAK*
Ga0114340_100303555	F068745	AGGA	LTFQKGSNNPKSGALAEAKAKVLALVAEGMSPKKAMEQLGKKPDTIRIWMLRDKEFAADLEQALQDAKSNSIKALGIAKEEITFPQFSEMFLDQRVFPHHMDWVDLLEDRVPSWLLNLSYRPQP*