Scaffold Ga0114340_1002965

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1002965
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13259
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (83.78%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 15 (100.00%)
• Associated Families: 15

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F001019	Metagenome / Metatranscriptome	804	Y
F001781	Metagenome / Metatranscriptome	635	Y
F002071	Metagenome / Metatranscriptome	596	Y
F003663	Metagenome / Metatranscriptome	474	Y
F004666	Metagenome / Metatranscriptome	428	Y
F007470	Metagenome / Metatranscriptome	350	Y
F008132	Metagenome / Metatranscriptome	338	Y
F014129	Metagenome / Metatranscriptome	265	Y
F015208	Metagenome / Metatranscriptome	256	Y
F029721	Metagenome / Metatranscriptome	187	Y
F038643	Metagenome / Metatranscriptome	165	Y
F043940	Metagenome / Metatranscriptome	155	Y
F085710	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100296512	F000450	AGGA	MLGKLADAVIAARPRWNDPAYATRIAISQIIGNDWGMETGFGLHVNEISDNEHKIAIVDWEQQTFSLHEEDDFRNTENKVRGMKNEALFTMDLSTFCEKYALEEILTN*
Ga0114340_100296514	F007470	AGGAG	MDYQDGFEDGVKFAREVIIANIRQWAETSDDGQVMDDVADRLEFGKVDYDL*
Ga0114340_100296515	F000311	GGA	MYFELTAPNQSALQKAYWDAEIMGLDPERIGPLTFNIGTGSIEKVSSIRDKFNLKETYLSEYEPTGYTRS*
Ga0114340_100296519	F043940	AGGA	MKNRFRVEIYDENKDNDLTIYSEQGVDKDHLTEIVFSNLNNFLGNVRAYVYDNVKKKKTTAVYLPMELVNRNRPRILTKIEIGWPT*
Ga0114340_100296521	F002071	AGGA	MSTTLEIGQTFTTEKSGVVGVIKAVDNHPSGVSRVLLDVNGSERWTSVSN*
Ga0114340_100296523	F003663	AGGA	MLSTAIELLDVTKNSIFDEDIMGLAGELHTRRNELSDEIFAKYLFMYSAAVASKVADGVTKVLLTESQMSDLCAIIDEMDNLTETILEENE*
Ga0114340_100296524	F038643	AGG	MKDTIRWALFPFTVDGVEFVSKLDIEGSMYQTVSNLPAGLFSRMNESAIRELIGKVSLMSRDEIQAELDRVNEGYQQAYLELA*
Ga0114340_100296527	F015208	AGGAG	MYKITCAYDENAPHWSKEYSDELNAHEEFAKFRDWGFADEYATINLFTPSGKCYTKIFHRNGKVVKR*
Ga0114340_100296529	F029721	AGGA	MRSYSIPDLLIGTYYRPTSLARRYHGGEINYAEKRDDVWAGENHECFAIRYNGNNWATIAVRVSD*
Ga0114340_10029653	F004666	AGGAG	MTTKRDYLVSKGITVGKRGRFSAAAKNALAEAEKNGIKFTAEAPQPKK*
Ga0114340_100296532	F014129	AGGTGG	MTTLKYEIREITLDNVSDEEANQIVCVFCDDYASNPFCGKCNEYKGLMTLGEWLSYTNESWLA*
Ga0114340_100296534	F008132	AGGA	MTKWDTIQEDIKDQYAHWDDADHELEDEEDFFGFAKAIEIDHLTDEEVEEVFNMFGDK*
Ga0114340_100296537	F085710	AGG	MDYLDYYDEVYTDIYLEFGADSVSDPNYAEQLLKERK*
Ga0114340_10029655	F001019	GGAGG	MTHYEPSLEILEVAYEVSPGGIRTFEVYDKGDNYDILDIPIFETESLTKAVDYCYNLGKDFTVRTYAEWEMRELLADL*
Ga0114340_10029657	F001781	GGAGG	MKLGDKEKLNECLYILDKTDLGLSLVWLWTWSTIKNFMEDETFIMKKTEDEMWDCLCEAVEAGHGFSLEYGAEQHHEDVMEWMLNREYMVDSMFEEEDDDE*