Scaffold Ga0114340_1002091

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1002091
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19352
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (51.43%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014606	Metagenome	261	Y
F028146	Metagenome	192	N
F036674	Metagenome	169	Y
F051072	Metagenome	144	Y
F085379	Metagenome	111	N
F104765	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10020911	F036674	N/A	VRDFDPVQLALDQGAILEQAGITFSYLGSTITGVWSSSRNLFDEFEDQRRDGVKFTVFFTASSVTGRPAQSQTLVRAGTTYFVEQVRFDAEGAGCEIDVAKVI*
Ga0114340_100209121	F051072	GGA	MQNNFNRTQPVKNVTGAGHSAARYTGTHGHKERSHYWVFIPGEGWVTWLEIHKQFSAAFNDWQMRQALGLRRKR*
Ga0114340_100209124	F028146	N/A	MNDTHEIKKAAVIAAASEQVRALLETHYDAMRKAAEESFVDDDTQAEPKAKASFTIEWDALAMAPTVTVKVGWSVRFKDESEAVVDPLQAKLPIGGAE*
Ga0114340_100209127	F104765	AGGCGG	MNALEIFALCAIMLCAGISVGFLWGLRNGERLGRDREWMDSFFRNIKRDAERRDKAGRFKKR*
Ga0114340_100209128	F085379	GGAGG	MSARPNAKSETIDEMVSRFAPFKEIVAEVKMQQQAVRQRIYNKGYRREYITHEERAHLLRRRGVKL*
Ga0114340_10020913	F014606	GAG	MSTRTDIRNAIGLKLTQAGVVPTANLLKGRNNTLVSTSFPSAAVYAVNEQVEVRTLSPANRTQYRTLQVMVEYFTAEVAGSTTIIDDLFDTGSAAVEAAVLADVTLGGVCDDLLLTSVDYVIEPDEERRWGVARHTFSCIYLTTD*