Scaffold Ga0114340_1000725

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000725
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58338
• Total Scaffold Genes: 119
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 85 (71.43%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000376	Metagenome / Metatranscriptome	1216	Y
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F001176	Metagenome / Metatranscriptome	756	Y
F003582	Metagenome / Metatranscriptome	478	Y
F010085	Metagenome / Metatranscriptome	308	Y
F011299	Metagenome / Metatranscriptome	292	Y
F038205	Metagenome / Metatranscriptome	166	Y
F038669	Metagenome / Metatranscriptome	165	Y
F071247	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_1000725101	F000376	AGGA	MSIYQEKAKECKCCGKHVPLPTVLKEYNGNMVCPTTFSNIVEYTRIWNAIGSRPPGNVRKHFSEYVQNIVEVNISKENNAN*
Ga0114340_1000725111	F071247	GGAGG	MGSNNKIPFNKTIIKDGRIIRLRKDGTIKADLGPYKTNSKKVK*
Ga0114340_100072523	F038205	AGGA	MGNIAEIIGVECDECGGAGFVFYGDEKEFDVKSCDCALETWGI*
Ga0114340_100072524	F011299	N/A	MMTKKHFKEIATILKYNSNKTHPAIFSKMVLDFAELCAKENSNFNVNKFYEASGYNVPNFSSK*
Ga0114340_10007253	F010085	AGGAG	LRQIQYVSQYIALSEEGLVPRLECPMDQGLLQSNLDLEDNIYLYCLSCSYKKFIGEKLYNDIKERVNKNV*
Ga0114340_100072544	F038669	GGAGG	MSDELSPHLQKLIDMGETGTDVMHGELKNLMYECETRLLDISELQDNPEYQYLSGRLDALTDIYVMTYNLSFAINERAKQRG*
Ga0114340_100072565	F001176	N/A	MSDNGTGMQTPPNNEPSGAVTSQEATRKNPNQGKFRSGIANQRSMTRVDRNKHGIRRETNMGPKKTGRPKKV*
Ga0114340_100072581	F000671	GAGG	MDKVLCYSCNKTKNKLNLKKSTLLPINLFMCEGCIESKFEPRWLIVITGRQSGPESVREFVLKKKYVGDEISASELLI*
Ga0114340_100072583	F000473	N/A	MFIDKNKNHFKHGINQWTGEPNKPVFYTPEMSKAIRGITKPVNNLQMDIVKYPEFLAIRLYEDNFIQFEGVKKEMVIDYVLKVKKLLESYGVRCELEGVPSERILR*
Ga0114340_100072587	F003582	N/A	MNIYKVKLEVEVEVEAFDENDALDYANDIFGVDDEIKNVKIINVKEK*