NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114340_1000719

Scaffold Ga0114340_1000719


Overview

Basic Information
Taxon OID3300008107 Open in IMG/M
Scaffold IDGa0114340_1000719 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26727
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (45.65%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023840Metagenome208Y
F036017Metagenome171Y
F047028Metagenome150N
F065742Metagenome127Y
F080002Metagenome115N
F085646Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0114340_100071934F080002N/AMVVTTYTSPAYSQSSSTELKRPCLWEEEFRIENLPGWIYTDNQPPASFKDCQAKISSLEYTIKDIELQIEIRELELKTGSSRHSNAFDFERWKVGALKAKQTHYYLLNAYSYWLIKNTPNVVDTASKLDKLIALLIEDPADFETKASALLD*
Ga0114340_100071935F085646N/AMDQTLKEIKTIREALTSIDISLQLLVSQKEGKTTSAFVSKKTISQRLNIPSVAIDKLIHQGIVSGGTSGLVEGKHYCKVDPTERNSSKFLYDPHAVMEAAWKNFTNV*
Ga0114340_100071936F047028GGAMSDLSRGATALIKNLFGGNETERMISAGVVRTILSDITRLYFENRAARGEGILIFNPEDPENSKYLTKEELENDLAVAQEGMDEKAEALFAKVIQVIEKESESDLALVAMVQSNEIAIHLIDPIEANKKIDELSNSLIL*
Ga0114340_100071941F023840N/AVRDEREQLHVGLTLEDDFTLTRLKNAAHALKGEDRDQYLWKTIFRFVCRERAFKSVMEEIGVVIDTNIDIFDEEEDE*
Ga0114340_100071946F036017N/AFLDFGYSIQSVTQTSGTTYAVQLSSNFGPPISFFTGEILSDRFDSTGAEKTTYNNYVVIGVGNGTTPLTPSFAPVFNSIFISLDTNNSWSVIDNETLAAPASLPTPGDYFTTEMRFGCNCPDYLAREDFNLYEYNLKRRYPYTLPQDAKPGQYDAGKDFLSSRESNSRDLPGFTRDFGFLYVKQLLNLPSYTDSSKVYSDPNLIYFAPRWCKHIYATFWDMQNRFGSDMFPLAWLAQPTDEPMDDRYRDEFEMNLAKQTTFDKRQQHLRWWEKYSPSQNTVPVHMMYPDMHPTMVKTLNFDTLASGTSTAMTASGFEMFKIDEYDPFAPPDPGVTPRLDGGIYNNGVLVSGATLIYDGGQYSNGALIPYPSYPSLINGGTY*
Ga0114340_10007199F065742N/AMVSVGAEFDYQKILDNWSVTDEQSKADFLDALYEFYGCNNGLYSGLFQRFQSDLTEFARHLVTMRGMAVAELFRAGLEL*

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