Scaffold Ga0114340_1000680

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000680
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22424
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (74.07%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F000473	Metagenome / Metatranscriptome	1097	Y
F002060	Metagenome / Metatranscriptome	597	Y
F003582	Metagenome / Metatranscriptome	478	Y
F010248	Metagenome / Metatranscriptome	306	Y
F012975	Metagenome / Metatranscriptome	275	Y
F023851	Metagenome / Metatranscriptome	208	Y
F026561	Metagenome / Metatranscriptome	197	Y
F074876	Metagenome / Metatranscriptome	119	Y
F080044	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100068018	F010248	GAG	MRKSERLRLVELEMVRMQFQIEYLNTAVKLLLEENKVKGPELDAGKWYEKKLKDLKDKS*
Ga0114340_100068021	F002060	N/A	MSLNYTAIIIAIAAAILSGMGTAIIAGIRDSRKEKIRQREREQDHLKMDLKDLKIQLYKVERDLTEWKDKYYSAIQELISVKAELEETLIKLSLIDMDLHSQED*
Ga0114340_100068022	F023851	N/A	MCETCITSKIEPRWVVILAGRSMGPEHVREFVLKKKYIGNDIAASELLV*
Ga0114340_100068023	F074876	N/A	VKEYYEIINVVYVHSLKAYGTIEKMGAYASVVKYTKDGIDYQELIENDEFAIIDEIVFEHAEEEK*
Ga0114340_100068024	F000473	N/A	MFDDKHFKHGINLFTGEPNKPVFYNQAMAKKIKEIKAPVIGLQMDIARYPDFLAIKLYEDNFIQYQGIKKEMVIDYVGKVKKVIESFGVRCELVGVPSERVL*
Ga0114340_100068026	F012975	GGA	MQVLNLTLKGVEVFIERSKTKNQESYWDNYDLMIWKSDHSGFTNIKGLFRKDTWGIAERISVDEQGIWKLPGKYVKHFK*
Ga0114340_100068029	F003582	N/A	MNTYRVKLEVTAEVQAFDEGDALDYANDIFGVDDEIKNVKVISIKEN*
Ga0114340_100068041	F000376	GAG	MSIYQEKAKECKCCGKHVPLPTVLKEYNGVPLCPTTFSNVVEYKRIWRALGSRPMGNIRKHFSEYVQQIVEETIDKNEDGTLQ*
Ga0114340_100068043	F000369	AGAAG	MSEIEPAIHYDRMNKVVEELLKGNSPTQIATLTGFSRKEVIEFIDEWKSVIHNDTSLRDRAKEAISGADQHYAMLIKEAWKTVEDADTQGQLNVKAGALKLIADIETKRIGMLQSVGVLENNELASQIAEAERKQEVLVKILKEVTSTCPKCKMEVAKRLSQITGIVESVVIEDASGI*
Ga0114340_100068053	F080044	AGGAG	MPDLNEFLNKKSEEKPYELEHLNGVRACSKCDEDVSGAYWDPVELVMSWRCSKAHETTFRVN*
Ga0114340_10006807	F026561	GAGG	MSMDGTGMAPPPAAGSASGAVTSQEATRKRPTQGLRSGIKVDTNRHGIRRETTNAPKPPRKTGRKKV*