NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114340_1000599

Scaffold Ga0114340_1000599


Overview

Basic Information
Taxon OID3300008107 Open in IMG/M
Scaffold IDGa0114340_1000599 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)62989
Total Scaffold Genes134 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)90 (67.16%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002515Metagenome / Metatranscriptome552Y
F007691Metagenome / Metatranscriptome346Y
F010766Metagenome / Metatranscriptome299Y
F011487Metagenome / Metatranscriptome290Y
F015600Metagenome / Metatranscriptome253Y
F020910Metagenome / Metatranscriptome221Y
F081245Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0114340_100059910F010766AGAAGGMRIKIIRFVVKTLGYEWGGDNLNAPVWTVKAKKKK*
Ga0114340_100059959F015600GGAGGMMNTTLEPRLQKLIDMGESGTDILHGELKNLMLEAENDYIEIEAEEREGGYSDAMLSMERTRAEGRMDALVEVYALTYQLAFAISDRIKNNG*
Ga0114340_100059961F020910AGAAGGMWSRYTFVCDPDECDALVEFTARDDFGFPLGVVEMKCPCGRMLNYISYEEAYQPIITDVSKVTPRTVVKIDSNPYN*
Ga0114340_100059964F007691N/AMTLNTIDDLINEIYESNYSHLEFEENMGGDACDCHIHTTLNTIAHYAGIEVGE*
Ga0114340_100059971F011487AGGAGMTYENDEILDEYYATVCPSCKENAVDAYEDKCTHCLLEEMSYTYNEDIALEMSLGLDY*
Ga0114340_100059972F002515N/AMKKTDEELRRLMELRRSNAASAVPSKKAYNRKKCQSELIQLKYQQKGE*
Ga0114340_100059985F081245GGAMIDFVKQLELNNYLADEQIDPLAKMLDELIKKGEYK*
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