Scaffold Ga0114340_1000593

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000593
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42788
• Total Scaffold Genes: 73
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (69.86%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Associated Families: 15

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F002071	Metagenome / Metatranscriptome	596	Y
F003643	Metagenome / Metatranscriptome	475	N
F004666	Metagenome / Metatranscriptome	428	Y
F005177	Metagenome / Metatranscriptome	409	Y
F007470	Metagenome / Metatranscriptome	350	Y
F008132	Metagenome / Metatranscriptome	338	Y
F009685	Metagenome / Metatranscriptome	314	Y
F020167	Metagenome	225	Y
F021288	Metagenome / Metatranscriptome	219	Y
F038246	Metagenome	166	Y
F048943	Metagenome / Metatranscriptome	147	Y
F057310	Metagenome / Metatranscriptome	136	Y
F061860	Metagenome / Metatranscriptome	131	Y
F085262	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_100059310	F048943	AGAAGG	MSNQLVEYMKIHLISIEQDQEDISNEMEKLDPASKDYNELDYEYNWLAGQIIATRHFLSVADDMMSS*
Ga0114340_100059311	F021288	AGGAG	MLGYSNGDLADMIYGVYQADLLVDADENPAIHNYLVKAHDFLQGLWAEGYFDNV*
Ga0114340_100059312	F020167	AGGTGG	MRTIDELVNEMYMDNEAHLEYMENMNGGDCDCQIHITLNTIVKYWWDEEK*
Ga0114340_100059316	F007470	AGGAG	MDYQDGFEDGVKFAREVIVNNIRLWAETSDDGPAFDEIADRIEFGKVDYDL*
Ga0114340_100059317	F000311	AGTAG	MYFELTAPSQTALQRAFWDAEIMGLDPERIGPLTFNIGTGSIEKVSKIRDKHMLTESYISNKETTGY*
Ga0114340_100059320	F005177	AGGA	MKNRYRVEIYDDVKANDLTIYSESNIDKEYLTEIVFSNMRQFSGNIRAYVYDNLKKKKTTALILPMELISKYKPTKLTSEEIGLS*
Ga0114340_100059322	F002071	AGGAG	MLEVGQTYTTSKSGVTGTITAIDNHPSGVTRLALDVNGTERWTSVSN*
Ga0114340_100059323	F085262	GAG	MDNLYSILAERHPDGDFNEMDLWEAIADSEGLELNEIMDGDLTEYL*
Ga0114340_10005933	F038246	AGGA	MGILDNLEAYLENAGDTEKCHYCQGIAKYNDLAEIDKAKYDVVGVCECHSYKGLVS*
Ga0114340_100059331	F008132	AGGA	MTKWDTIQSDVADAYAHLAEEEMYENLMAEEEDVFGFIKAIQIDHLTDEQIDEVFNMFGDK*
Ga0114340_100059332	F057310	AGAAG	MKITYSVWQGSIIKGSGFTASKMSEVMATIKELNSTDVKPKFEAFISKVEQDNK*
Ga0114340_100059348	F003643	AGGAGG	MNTDLNKDGKITMQEKILAALASYGRHFLGASIALYMTGNTDPGDLVKGGIAAVLPVILKALNTNEPAFGFTKK*
Ga0114340_10005935	F004666	AGGA	MTTKREYLVSKGITVGRRGRFSSAAVNALQEAEKAGIKFTSEVKTPKK*
Ga0114340_10005937	F009685	AGGAGG	MSDQYVDKILADAQKLLWGGSETENIEAHNMIAKLIKERMDDNGSV*
Ga0114340_10005939	F061860	N/A	MIISDELAPHLQKQVDLGMPGTDILHGELKNLMYETEQVLLPLLENSNQLGSDEEYHDTVDRLYNEGYMDALTHIYQLTYNLAFAINDRSKNATN*