Scaffold Ga0114340_1000406

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000406
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41267
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (85.94%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016149	Metagenome / Metatranscriptome	249	Y
F032583	Metagenome	179	Y
F051711	Metagenome	143	Y
F051715	Metagenome / Metatranscriptome	143	Y
F064523	Metagenome / Metatranscriptome	128	Y
F083915	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_10004061	F032583	AGGAGG	MSKEVTLPSGAKVTLKDPSTLRVKDRKNVMKSADNAVGGDLTKALALGDALIAMLVESWTFDLIPPSVKLESLDELTMADYDALVEHTKDAQKYLFPNLTETPQTEADPKAGGENSNA*
Ga0114340_100040611	F051711	AGCAGG	MAYINQPLDLHRMFTDINTRLNKLETATRFTFPNVTSDPTYPRIGDAWLNITTNQAKIVDASGNVRVLNWT*
Ga0114340_10004062	F051715	N/A	LLKGGERHEAFSYPDEHWYYYQMAERFGWTPEQVDNLPANTADWLIAIARTVDEVKTERLQDG*
Ga0114340_100040640	F083915	AGGAGG	VVENLMSAAEVCERLGITLNNLRQIQHRKTLTWVQKSGRNVFYTKEDVENYFLKRQERNQG*
Ga0114340_100040657	F016149	AGGAGG	MARWVAPDKGVKETVIGGQSYYTDRQGIYNVENKAHQRAMKAEGFFEASLNPISAQDRMRGFTCVECGFDGWFRKCGRCGYESQDIPRDGE*
Ga0114340_100040662	F032583	AGGAGG	MSKEVTLPSGAKVTLKDPSTLRVKDRKNVMRSADNAVGGDLTKALALGDALIAMLVESWTFDLIPPSVKLESLDELTMADYDALVEHTKDAQKYLFPNLAETPQTEADPKAIGENSNA*
Ga0114340_100040663	F064523	N/A	MAERFGWTPEQVDNLPASTADWLIAIARTVDEVKTERLQDG*