Scaffold Ga0114340_1000179

Overview

Basic Information

• Taxon OID: 3300008107
• Scaffold ID: Ga0114340_1000179
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 101240
• Total Scaffold Genes: 155
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 124 (80.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000264	Metagenome / Metatranscriptome	1424	Y
F002935	Metagenome	519	Y
F004475	Metagenome / Metatranscriptome	436	Y
F017484	Metagenome / Metatranscriptome	240	Y
F021757	Metagenome	217	Y
F029106	Metagenome	189	Y
F038549	Metagenome / Metatranscriptome	165	N
F067413	Metagenome / Metatranscriptome	125	N
F097334	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114340_1000179120	F004475	GGA	MSNWTDELSDEHKEQLWDFIVETVKEIREQIAQDIEGTSELWKAKGLNKSRRTTKAFQISAAIARGQNEI*
Ga0114340_1000179136	F002935	GGA	LFILLALHYGDLIYFPFSGKINIYLLTKGNTMSERSKGYIGQIVDGKKLATIANDIYRLQYSNDFSECTVDNLLFVTLEEKNVFGDNKYALVCSEGVGWEQDTYGCLEVPTNIGQMGLWNGRVFISVDTVKECLTEQTEDIADYIRVFGDRLDRNCSLWQSKMSVPSDMILS*
Ga0114340_1000179149	F021757	AGGTGG	MMTRKDYVAVAEILSSYKDLIGDEFLFEDLVEDFSSFFAEDNPNFKFDKFREACMK*
Ga0114340_100017916	F097334	AGG	MPEVLLSNDDVTVLGPPSTVEVLVDIGPSGTRGSQVFVGVGDPNIVEIGQTPLLNDLYINTSPGTDYGYLYQYVSEPGGDTWIQILEINPTIYSENHLTTYAAGEGQVVIPIADIVTVTGTPLTAANFNVQYSIAHDNPIASSMSIPALAGAGDDLVINFKAVEHRSDIDSGPYGDWALLTGEVTTHLFISIVAADEES*
Ga0114340_10001792	F017484	AGGAG	MSIEIFRMNESGAGWVDIESATTAELLDLELAITFNAPMQMLCFKCHTPIPKGNVCINHKNVKGGIYFE*
Ga0114340_100017933	F067413	GGA	VATNNKDFVVKQGIKVATGVTFPDNTVQNTAALTVGSTFPVSPSNGQLFLYTVTERIYYYLNGEWNPIATYLDAQYEYDGNGMTYPTLFATLNGGAPNTTFTNALPSADGGSPSEQF*
Ga0114340_100017945	F038549	N/A	MTLNTYAQTGFPPTFLNAYINSELKEFGLIPDGPNPFQPFFPAQSPINIEDIYNDSVYIKNNPNAIVVMFDRLIRFRPNAFYRNKREQLVYFIYAPDLTKLFDATRVIIECLDREDSAAQDLNAWLSVNDIEDENGNAITKNVMFHNIKVYQADEARDIAELASARTLFLNKLVIEYDYHTTDTLGTSQRYT*
Ga0114340_100017972	F000264	GGGGG	MAGKLYTSEVWLRKRFLMDKKSPEEIAKECGASVETIYVYLAKFGLRKSRR*
Ga0114340_100017973	F029106	AGGA	MNKAQKVLIGIGIAGAVGLTYVITALKGMPEAFDWEEDESDE*