Scaffold Ga0114249_1004682

Overview

Basic Information

• Taxon OID: 3300008102
• Scaffold ID: Ga0114249_1004682
• Source Dataset Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 404239096 reassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4016
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063778	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114249_10046821	F063778	AGCAG	MPETISEGAKQQLLQQLQDALGLVENADTSAHDVAAITHSAADGHQLTEVMLQEMTAARGHLKSCADQIEYAISSIKAIPLDPPPED*