Scaffold Ga0114261_100001

Overview

Basic Information

• Taxon OID: 3300008099
• Scaffold ID: Ga0114261_100001
• Source Dataset Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763820215 reassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 535412
• Total Scaffold Genes: 549
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 65 (11.84%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F041827	Metagenome	159	Y
F042387	Metagenome	158	N
F061927	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114261_10000112	F030786	N/A	MKRTKIHNVVFQMLVVMIVTGSLQLLLKNGSAVKGGNATGAKKISLADITGGDDSETGVLKVKYFDDEGADKIFENNNNRILNTINNQHISYNSQSAEYSKPQLFLLYQSLKVDC*
Ga0114261_100001227	F042387	N/A	MKRIILFFMAGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYSYSGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPNGHFYLNPNNMVVIDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWASHNPTLIQKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVIMMVYEYNK*
Ga0114261_100001232	F041827	N/A	MKRFLSALALGCLLLSCNRDLENNETPAPAPQKEKLVLLKQLSEGSTVTFQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRRYDRGETNITYQYDNQGRLVSSHAISTKFYPGTGLTPRCSVEKKHTYTYQGNKVIVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIEQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNHGIERIEDLRYIDNIKTRDFHDGDYWEYRYRYDKENTYNGDYPNGVGIHARSHNDPTYDEYLYEISANRSYIKEE*
Ga0114261_100001233	F041827	N/A	MKHFLSALALGCLLLSCNRDLENNENNETPAPPKEERLVLASLYEFGNNVRFQYKNGNEINRMTIDGPHREASMDFEYDTYGRIVKERRFDHKSDYGETNITYQYDNQSRLTSSHAISTQYYPDTGYTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLFVENGKVVKSLDENNQIIETIEYLNTKNTLRNMKGFPPLVVEFYIRKFTYELPFYNGIEHIEDLRFIDNIKTRDFHNGSYWEYRYSYDKGKSHDNDYLEIENITVYEKSHNDPTHDNDLYSVSPARFYTKEK*
Ga0114261_100001428	F061927	N/A	MKNPIFILSAMFILGACSSESAKKAYNDSFRKTFIEEGVKSCIENSGLKESEAREYCECAMNKINENLSNDEIIDISMDNPPKDLDERIDKAISSCIGK*