Scaffold Ga0110929_1014628

Overview

Basic Information

• Taxon OID: 3300008072
• Scaffold ID: Ga0110929_1014628
• Source Dataset Name: Microbial Communities in Water bodies, Singapore - Site MA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6125
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (47.06%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Water Bodies → Microbial Communities In Water Bodies, Singapore

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.3
  • Long. (^o): 103.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001617	Metagenome	662	Y
F018509	Metagenome / Metatranscriptome	234	Y
F105051	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0110929_10146281	F001617	N/A	YYIEILNTKQVYAEFRKARDMSFNRDPIRMAKALDSFSTNKEYEKHVIEVINRLRNNK*
Ga0110929_10146287	F018509	AGG	MRGSIICPKCHGNGFIYKSEQGNEKKLPADCDYCKNQGEVDITEDVINDLDDAGQIQ*
Ga0110929_10146288	F105051	AGGA	MTMTQYKKAIAKLLKAYHKKWDCFGKRRKNGSKKS*