Scaffold Ga0110929_1002213

Overview

Basic Information

• Taxon OID: 3300008072
• Scaffold ID: Ga0110929_1002213
• Source Dataset Name: Microbial Communities in Water bodies, Singapore - Site MA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31960
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (87.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Water Bodies → Microbial Communities In Water Bodies, Singapore

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.3
  • Long. (^o): 103.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034113	Metagenome / Metatranscriptome	175	Y
F071028	Metagenome / Metatranscriptome	122	Y
F075840	Metagenome / Metatranscriptome	118	Y
F083438	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0110929_100221310	F034113	AGGAG	MALTPSWKTNAEGEEEYIDKGAVTTPQINPAVDAKYAAGKAQALATDKVEWPTKVSGLTY
Ga0110929_100221312	F083438	AGGAGG	MRKGTQAPAPMSKPKEGAMGETTKVSGGKVMAPYAGAAKPGKKVKK*
Ga0110929_100221321	F071028	AGGAG	MAYMATTPWEYQTWGANQPWPDKYTRLSQRRIAGGTSTGTINPFLTDIARGVTIIVKDGVIETTLYPYQNTLADADWYILGGHQQVITDAQAAFLIANGYGDYVSPII*
Ga0110929_100221343	F075840	AGGAG	MKFNNKVLEMWAKWVVGNLFTAIVIIGKSPLDFTTADWKHAANALWLAVVPVVIAWANPKHDLTMTKPK*