Scaffold Ga0110939

Basic Information
Taxon OID	3300008069 Open in IMG/M
Scaffold ID	Ga0110939_1000469 Open in IMG/M
Source Dataset Name	Wastewater microbial communities from the hospital sewers in Singapore - Hospital 3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300008069 Open in IMG/M

Scaffold ID

Ga0110939_1000469 Open in IMG/M

Source Dataset Name

Wastewater microbial communities from the hospital sewers in Singapore - Hospital 3

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Singapore Centre on Environmental Life Sciences Engineering (SCELSE)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6268
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (41.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

6268

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (41.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Engineered → Wastewater → Unclassified → Unclassified → Unclassified → Wastewater → Wastewater Microbial Communities From The Hospital Sewers

Source Dataset Ecosystem

Engineered → Wastewater → Unclassified → Unclassified → Unclassified → Wastewater → Wastewater Microbial Communities From The Hospital Sewers

Source Dataset Sampling Location
Location Name	Singapore
Coordinates	Lat. (^o)	1.3	Long. (^o)	103.8	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Singapore

Coordinates

Lat. (^o)

1.3

Long. (^o)

103.8

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F060985	Metagenome / Metatranscriptome	132	N
F080163	Metagenome	115	N
F094005	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0110939_10004695	F094005	N/A	MKKEIVKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNSFVAYHQSQKSLEAIKKWLDDNGKHKDDETLEKVITLDKKLKKLIEKLNE*
Ga0110939_10004696	F032312	GAG	MPKIKDYDEDLSAPKILRRRDNKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYNGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS*
Ga0110939_10004697	F060985	GGA	MSNIDEKAKNNFTIEMRIFENYEKVKYEIIKAIDFLRHSETPMGMCKIFDNQNHGFWHSVIKPWFQPERFGITHLWFTSGFSFIGYGEYHTIRGNRWLKTPIDKIDRENHIFGYWFPPYKKYIPHRLRVLRLALKDLERIKEEYGKD*
Ga0110939_10004699	F080163	N/A	MKTIKFLQESFETKERFQQEISFKYSYNRDTVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKDNFCNDAKQFLESINDFDKIIFVIITYMKTYFDFCKDYSKISLHIHLVQFDFTTTILIQGFYNHNHSDLSFSTRLENNILDSENELLQEKLELIREELCELIGVDPDLQKKGHDENYIFNLNVDSDNQRGFLLQATEL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0110939_1000469

Overview

Ecosystem & Geography

Associated Families

Sequences