3300008069: Wastewater microbial communities from the hospital sewers in Singapore - Hospital 3

Overview

Basic Information

• IMG/M Taxon OID: 3300008069
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118183 | Gp0131408 | Ga0110939
• Sample Name: Wastewater microbial communities from the hospital sewers in Singapore - Hospital 3
• Sequencing Status: Permanent Draft
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 201498125
• Sequencing Scaffolds: 9
• Novel Protein Genes: 16
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	2
All Organisms → Viruses → Predicted Viral	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Microbial Communities From The Hospital Sewers
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Unclassified → Unclassified → Unclassified → Wastewater → Wastewater Microbial Communities From The Hospital Sewers

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Singapore
• Coordinates
  • Lat. (^o): 1.3
  • Long. (^o): 103.8
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F080163	Metagenome	115	N
F094005	Metagenome / Metatranscriptome	106	N
F099269	Metagenome	103	N
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0110939_1000468	All Organisms → cellular organisms → Bacteria	5757
Ga0110939_1000469	All Organisms → cellular organisms → Bacteria	6268
Ga0110939_1002752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	2054
Ga0110939_1002753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	2409
Ga0110939_1007321	All Organisms → cellular organisms → Bacteria	1686
Ga0110939_1010058	All Organisms → cellular organisms → Bacteria	1712
Ga0110939_1016518	All Organisms → Viruses → Predicted Viral	1029
Ga0110939_1018784	All Organisms → Viruses → Predicted Viral	1042
Ga0110939_1021531	All Organisms → cellular organisms → Bacteria	1398

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0110939_1000468	Ga0110939_10004685	F094005	LIFKNKIVYLYNKNKYIIYMKKEIIKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNAFVAYHQSKKSLEAIKKWLDDNGKHKDDETLEKVITLDKKLKKLIEKLNE*
Ga0110939_1000468	Ga0110939_10004686	F032312	MARIKDYDEDLSAPKILRRRDNKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS*
Ga0110939_1000468	Ga0110939_10004687	F060985	MSNIDEKAKNNFIIEMRIFENYEKVKYEIIKAIDFLRHSETPMGMCKIFDNQNYGFWHSVIKPWFQPERFGITHLWFPPGFSFIGYGEYHTIRGNRWLKTPIDKIDRENRIFGYWFPPYKKYIPHRIKVLKLALKDLERIKEILDIIL*
Ga0110939_1000469	Ga0110939_10004695	F094005	MKKEIVKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNSFVAYHQSQKSLEAIKKWLDDNGKHKDDETLEKVITLDKKLKKLIEKLNE*
Ga0110939_1000469	Ga0110939_10004696	F032312	MPKIKDYDEDLSAPKILRRRDNKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYNGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS*
Ga0110939_1000469	Ga0110939_10004697	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKYEIIKAIDFLRHSETPMGMCKIFDNQNHGFWHSVIKPWFQPERFGITHLWFTSGFSFIGYGEYHTIRGNRWLKTPIDKIDRENHIFGYWFPPYKKYIPHRLRVLRLALKDLERIKEEYGKD*
Ga0110939_1000469	Ga0110939_10004699	F080163	MKTIKFLQESFETKERFQQEISFKYSYNRDTVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKDNFCNDAKQFLESINDFDKIIFVIITYMKTYFDFCKDYSKISLHIHLVQFDFTTTILIQGFYNHNHSDLSFSTRLENNILDSENELLQEKLELIREELCELIGVDPDLQKKGHDENYIFNLNVDSDNQRGFLLQATEL*
Ga0110939_1002752	Ga0110939_10027523	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDNFYDYSNASNIHYEGGKFPSMLTIQLFNLEF*
Ga0110939_1002752	Ga0110939_10027526	F105375	MKNNEIFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYIENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADAMVNFAMNFTDGEANIKPINRISSNIMQITFTV*
Ga0110939_1002753	Ga0110939_10027533	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLRANQYKLYPLLLDILKISLKDAYYNYSNTSNIHYEGGKFPSMLTIQLFNLEF*
Ga0110939_1002753	Ga0110939_10027536	F105375	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEETLDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVNFAMNFTDGEANIKSINRISSNIMQITFTV*
Ga0110939_1007321	Ga0110939_10073214	F044555	MKTTNPLSRITISQKDNQILSCKVYKEPNYILSMSNEEILELISGLDYMGNLPTVPDLGKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPGDLVSLSQHHKR*
Ga0110939_1010058	Ga0110939_10100584	F044555	MKTTNPSSRITISQKGNQILSCKVYKEPNYILSMSNEEILELISGLDYIGNLPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR*
Ga0110939_1016518	Ga0110939_10165182	F064817	MNIKNLFNRFRKWEPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSEMVITKEKYQAAKDLVPAHEVSDRFKIPEYITRVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDTLFLSHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETV*
Ga0110939_1018784	Ga0110939_10187842	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI*
Ga0110939_1021531	Ga0110939_10215312	F099269	ELLLLDDLGDRASGASVLASATGDAGVLVSDGGDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV*