Scaffold Ga0110935_1001339

Overview

Basic Information

• Taxon OID: 3300008065
• Scaffold ID: Ga0110935_1001339
• Source Dataset Name: Wastewater microbial communities from the domestic sewers in Singapore - Site 3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18823
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (65.52%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Unclassified → Unclassified → Unclassified → Wastewater → Wastewater Microbial Communities From The Domestic Sewers

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.3
  • Long. (^o): 103.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040153	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0110935_10013398	F040153	N/A	MSCPSSNIVGGCDFTQFLVDQTPYFDELIVEDIRPTDGWLYNVSTGSTELGTPTEITQDRFRSVWPNTTKKWDRVVANGVGCTGNPCDPPEYQIGWGADRITYYAEQQAWSTPLLCYDQEMHITKAKEHLDQIISEVLRPATTAISSNFLRKRALQWAKRKWQCNKNMSAFTYTWTVVNTNEEVYFDCSCHPDQTYKLVPQMLQSRFEPLMRLGYAGKNPFADTAPFIELVTDIATCWELDRLGGQTGVGGTPSVSGNWRFEQWGSTNAYWRYGFSGQIGNFMVRTDPLGLRFNYVTDLGAGAGANRYRYQVVLPYKNSVTSGAGGAAGIGSDENVDFDKAHFTLTYIMHKKGMELLTPNATPINPEMPFGHRDFGGKWKFAMHDLGEDSTGKAISNKWENKGQFIAWFKYYVRPLHPEFMEVFFHKREPMCIPEINTCSADPGYPAQVYSSQNTTC*