Basic Information | |
---|---|
Taxon OID | 3300008055 Open in IMG/M |
Scaffold ID | Ga0108970_11223137 Open in IMG/M |
Source Dataset Name | Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Oregon State University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1802 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Netarts Bay, Oregon, USA | |||||||
Coordinates | Lat. (o) | 45.394187 | Long. (o) | -123.939629 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F031872 | Metagenome / Metatranscriptome | 181 | N |
F033435 | Metagenome / Metatranscriptome | 177 | N |
F097357 | Metagenome / Metatranscriptome | 104 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0108970_112231371 | F031872 | N/A | DTLTADATLQGLLAVDNRSPSYQQGIYLYLAPEKDPISLRQPQVPYIVVRHTDNGQDDTTAMCGGRILTSSVHQVWCWDTQSGAVSMARIKGIVDRIDTLLNKQSVNSTTPVFFLNRASVSSSVDVSQDGRVDNGIAQIYVATITPEV* |
Ga0108970_112231373 | F033435 | GGAG | LSNSVFDNIPKLEGRPNYSVDIERFIGAPGAFVFREPKASDLFPRPEVEKMLKIGFPEFPAQMLQILMIMARCYVTQSGDGEINPARRFAQLARDRSDIYLYTVGEFARAFPIDIEAAVDEVPND* |
Ga0108970_112231374 | F097357 | AGG | VAQKILYCSVRHLKRHPRETDLTIEEFAEVAWAGEVWENQIVEIVKAVMSVLAKRTL* |
⦗Top⦘ |