Scaffold Ga0108970_10698437

Overview

Basic Information

• Taxon OID: 3300008055
• Scaffold ID: Ga0108970_10698437
• Source Dataset Name: Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12325
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location

• Location Name: Netarts Bay, Oregon, USA
• Coordinates
  • Lat. (^o): 45.394187
  • Long. (^o): -123.939629

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045703	Metagenome	152	N
F057903	Metagenome / Metatranscriptome	135	N
F087084	Metagenome	110	N
F097206	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0108970_106984371	F087084	N/A	LIPPCPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVHTIRMVGVGLNGGGFSQWF*
Ga0108970_1069843712	F097206	N/A	MYRPPSPDELKQLLIAAFCAGMVITAAYFILFVVK*
Ga0108970_1069843718	F045703	GGAG	MNIPPALSVAFVYRHKMTSEVLVVDIDRARELDAARPYWQHVSTVDPIIILQLIVKAKGRARTKIIKELSEKP*
Ga0108970_106984379	F057903	GAG	MESGIRAVQAISTMQPKMRYKNLGNSSVQVELLSDDVEIRIGETKWSGVVYMREGKRKLYVRTKAEFNAKFALIDAKP*