Scaffold Ga0108970_10472778

Overview

Basic Information

• Taxon OID: 3300008055
• Scaffold ID: Ga0108970_10472778
• Source Dataset Name: Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1430
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location

• Location Name: Netarts Bay, Oregon, USA
• Coordinates
  • Lat. (^o): 45.394187
  • Long. (^o): -123.939629

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020863	Metagenome	221	Y
F026864	Metagenome	196	Y
F037113	Metagenome / Metatranscriptome	168	Y
F073256	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0108970_104727782	F026864	AGGAG	MNEQDKMAQFVFTVVIAPANKQYDVELWDFAGDEPKQLSTGGGSNWRTALGEALSKIELPTDKVEKTINDVIKEGVEDEGV*
Ga0108970_104727784	F037113	AGGA	MWTVWAGGSEINWQHYTHKIDAERVAEFWREVKGYDDVVVEEVVA*
Ga0108970_104727785	F073256	GGAG	MKLQEVDTIQDLKEWVEENMPGARLTEDSAGDIVIHTGLHSTMGGYLHAKEDVA*
Ga0108970_104727787	F020863	N/A	VATLEKLIEPLFEGEVVEDAPYESMKRPHLVLQEGSKTYGRAWRVHFTGGSKYGSGHCEPRGFSDYLGGSKAEAAQSLRKLIAGIHTGLMIAEKKEVKA*