Scaffold Ga0108970_10024009

Overview

Basic Information

• Taxon OID: 3300008055
• Scaffold ID: Ga0108970_10024009
• Source Dataset Name: Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9747
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (50.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary → Microbial Communities Of Marine Eelgrass

Source Dataset Sampling Location

• Location Name: Netarts Bay, Oregon, USA
• Coordinates
  • Lat. (^o): 45.394187
  • Long. (^o): -123.939629

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000922	Metagenome	833	Y
F005388	Metagenome / Metatranscriptome	402	N
F010673	Metagenome	300	Y
F090064	Metagenome	108	N
F102590	Metagenome	101	N
F103133	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0108970_1002400914	F010673	N/A	MNPKLLPILQRIVARDSVLSSFNADHLPQSALAYVRHYYLNDNFLWLTPEDQDTLETLPPFADNLSESIRPAGGIGNPDSTVYHLFDDGSLWLKTNAYSSVWADARDFAVEIILPRMELTRMDAELLRAIGMDDAVESVRDDFFHAFAETLHRDCGIPHCDAREHWNAFSRQLGDSACESIVLGGSESGRAEGLRFASEYTVNA*
Ga0108970_1002400915	F103133	N/A	MRYKIQLSTSTGGWSDLRESANDGQTYETCLFPTRKAAIAAREEFGELSEFLETTRIVTAETPETENIYA*
Ga0108970_1002400917	F102590	GGAG	MKTHTPGPWRTTGLNVRAGDALICYAMNHHAHAETPEPEKMANARLISLAPQMLLALQRLAHPMADDEDLDYAREVIAKAKGQQ*
Ga0108970_1002400918	F090064	AGG	MKVYWTVYFGKFRRSEYTFQGPNAKRDAQRLAKRLGGRVVREKGQQ*
Ga0108970_100240096	F005388	N/A	MSCPNVFNAFAVATESLAQDVYKRASYRSMWLNLIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGNPGDNGGACDVTYNDVPVGYNAVTWGPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNMFAKYAIKAVADSSFTQVETIPSGVNELPWIQTGSVGQALNQATSELTQEMLDVAAATLIRNGATNPDSSGFISFSSDGPVFPLYIGMEASQRIAQNNAALREDLRFADMGSGPGAELLKRIGANRVIKNFRHIPNLFPPRFSYAGGKYTLIQPFTSSSGTKGTVFSVNPSWTTALYEGAFIPTPYVIKSHIVRPVNRVGDLSWQPTNYMGEWQWVTGAYKLDVDCADPLEKKGQHYAEFVHAVEPVFTNQGMTIIFRRCTGALTTIICS*
Ga0108970_100240098	F000922	N/A	MTAKQWERAKAQYLSGREWQAIASDLSVPINTLRSRACREGVTKVKAQMQTICTEKKTQTLESLSALVRSKLAADAASTLERIDSYALDGIKDESTREQILGSVAKRSALVFGWSEQGEQASVSINLLGSMPDRTSVEVNVSESETK*