Scaffold Ga0105746_1049610

Overview

Basic Information

• Taxon OID: 3300007973
• Scaffold ID: Ga0105746_1049610
• Source Dataset Name: Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1317
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location

• Location Name: Oregon, USA
• Coordinates
  • Lat. (^o): 46.2357
  • Long. (^o): -123.9153
  • Depth (m): 1.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026856	Metagenome	196	Y
F058793	Metagenome / Metatranscriptome	134	N
F066529	Metagenome	126	Y
F093485	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105746_10496102	F058793	AGG	MMDATEARLNSHEQVCTLRYEMLCARIKRLENVIMAASGVMLTGMGGIIFAMMK*
Ga0105746_10496103	F026856	N/A	MVVIWNNLSEWAGTADSAELRHKVIIAYKNALEREKK*
Ga0105746_10496104	F066529	GGA	MIDKIRWFPIVDATGYPQKTDGTQRRIEKHQEEYRAIVKAAKAEEKLDDLLFELYCKKAEQQKIRLEIFTNRKLDFYV*
Ga0105746_10496105	F093485	AGGA	MVTAKKPPAKVAPVKRSKPKAEQTINVTMAAPTAPPKPEAKKDDSTLGKVIGLIEWVDNPFKLFTVILLSFLAFAGCFAWDSRQVILQAITTQDKMPQLAKQEALLTPARSLLK