Scaffold Ga0105745_1170042

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105745_1170042

Scaffold Ga0105745_1170042

Overview

Basic Information
Taxon OID	3300007972 Open in IMG/M
Scaffold ID	Ga0105745_1170042 Open in IMG/M
Source Dataset Name	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460ABC_3.0um
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	675
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location
Location Name	Oregon, USA
Coordinates	Lat. (^o)	46.2357	Long. (^o)	-123.9153	Alt. (m)		Depth (m)	1.2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019319	Metagenome	230	N
F040082	Metagenome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105745_11700421	F040082	AGGAG	MTGDTYAMSQEIVELQTRVSELMVALERVTEQRDNAVDAAESLHQELEACRERIKSLGGQLDRLRIHLQQGIEL*
Ga0105745_11700422	F019319	GGAGG	MTKKDIQDAIAFLEKMFVGVGDQDRLFNVIAALKQELDRRSKK*

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