NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0111098_10053

Scaffold Ga0111098_10053


Overview

Basic Information
Taxon OID3300007885 Open in IMG/M
Scaffold IDGa0111098_10053 Open in IMG/M
Source Dataset NameSpring water viral communities from Black Pool hot spring in the West Thumb Geyser Basin, Yellowstone National Park, WY, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterRoche Applied Science
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3816
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Alkaline → Planktonic → Spring Water Viral Communities From Black Pool Hot Spring In The West Thumb Geyser Basin, Yellowstone National Park, Wy, Usa

Source Dataset Sampling Location
Location NameYellowstone National Park
CoordinatesLat. (o)44.41822Long. (o)-110.57182Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040513Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0111098_100538F040513GGTGGMHALLSFLDYLVSELEYSYYLKKADSLCDYLDYLDAVVSLNEIRASEEYRMLCK*

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