3300007885: Spring water viral communities from Black Pool hot spring in the West Thumb Geyser Basin, Yellowstone National Park, WY, USA

Overview

Basic Information

• IMG/M Taxon OID: 3300007885
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118208 | Gp0131447 | Ga0111098
• Sample Name: Spring water viral communities from Black Pool hot spring in the West Thumb Geyser Basin, Yellowstone National Park, WY, USA
• Sequencing Status: Permanent Draft
• Sequencing Center: Roche Applied Science
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 2424289
• Sequencing Scaffolds: 19
• Novel Protein Genes: 20
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	1
Not Available	8
All Organisms → Viruses → unclassified bacterial viruses → Cyanophage cp-OS	4
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Haladaptatus → Haladaptatus paucihalophilus → Haladaptatus paucihalophilus DX253	3
All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Spring Water Viral Communities From Black Pool Hot Spring In The West Thumb Geyser Basin, Yellowstone National Park, Wy, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Alkaline → Planktonic → Spring Water Viral Communities From Black Pool Hot Spring In The West Thumb Geyser Basin, Yellowstone National Park, Wy, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.41822
  • Long. (^o): -110.57182
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003460	Metagenome / Metatranscriptome	485	Y
F015070	Metagenome / Metatranscriptome	257	Y
F040513	Metagenome / Metatranscriptome	161	Y
F041593	Metagenome / Metatranscriptome	159	Y
F069691	Metagenome / Metatranscriptome	123	N
F072057	Metagenome / Metatranscriptome	121	Y
F076662	Metagenome / Metatranscriptome	118	Y
F077497	Metagenome / Metatranscriptome	117	Y
F084271	Metagenome / Metatranscriptome	112	Y
F104050	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111098_10036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	4367
Ga0111098_10053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	3816
Ga0111098_10125	Not Available	2398
Ga0111098_10242	Not Available	1819
Ga0111098_10341	All Organisms → Viruses → unclassified bacterial viruses → Cyanophage cp-OS	1920
Ga0111098_10356	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Haladaptatus → Haladaptatus paucihalophilus → Haladaptatus paucihalophilus DX253	1572
Ga0111098_10393	All Organisms → Viruses → unclassified bacterial viruses → Cyanophage cp-OS	1648
Ga0111098_10394	Not Available	1484
Ga0111098_10406	Not Available	1544
Ga0111098_10416	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Haladaptatus → Haladaptatus paucihalophilus → Haladaptatus paucihalophilus DX253	1438
Ga0111098_10489	All Organisms → Viruses → unclassified bacterial viruses → Cyanophage cp-OS	1529
Ga0111098_10645	Not Available	1186
Ga0111098_10668	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Haladaptatus → Haladaptatus paucihalophilus → Haladaptatus paucihalophilus DX253	1193
Ga0111098_10796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	996
Ga0111098_10839	Not Available	1100
Ga0111098_11075	Not Available	1010
Ga0111098_11203	All Organisms → Viruses → unclassified bacterial viruses → Cyanophage cp-OS	741
Ga0111098_11558	All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1	584
Ga0111098_11956	Not Available	741

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111098_10036	Ga0111098_100362	F072057	MGGKGQIGQNGSNGNGQADMFCRTVIAAVAAMLALRLCQYLRRLLQG*
Ga0111098_10053	Ga0111098_100538	F040513	MHALLSFLDYLVSELEYSYYLKKADSLCDYLDYLDAVVSLNEIRASEEYRMLCK*
Ga0111098_10125	Ga0111098_101252	F084271	MIRKGKAETVRVMGIKWVWNYTQRKWIGKSAMGEWSLWYDGTRWNLQSPNSAIYTFLRQHRYEAMVQAGYTIASVERYMAGR*
Ga0111098_10242	Ga0111098_102422	F041593	MTSKNLHNELYKLAIAMAKYNGKGVKQNLDYLLSQEQERNKDNSDCIQQSLPMH*
Ga0111098_10341	Ga0111098_103411	F069691	MTGSPPSNLTVEQILAWSLLALHTQGSSQTVQEGGETLPRFSYALAPNAIILRANLPLQAGWPGATSPLWTRVAEAVQGGLPQGF*
Ga0111098_10356	Ga0111098_103564	F003460	MPKARIDERYFHDLEHAFEVLHEVLSPRGLYADVGMMFVVNLRRASELRDISIELVIRSRSGGSPVWFAKESLRVPGRMKLRSVASVLFGLMMRAAYDVEAQISLPGDERQSDQGRARILPRK*
Ga0111098_10393	Ga0111098_103932	F069691	MNGSPPSNLTVEQTLVWALLALHTNGSAQTVQEGGRDSPPSFLMHWPPNAIILRANLPLQAGWPGATSPLWTRVAEAVQGGLPQGF*
Ga0111098_10394	Ga0111098_103942	F084271	MDRKGKADTVRVMGIKWIWNYKARKWEGGSTVGMWSLWYDGNRWQLQSPNGTIYTFLKQHRYEAMVQAGYTIASVERYLAGR*
Ga0111098_10406	Ga0111098_104065	F104050	MTSCERKCIIRLRKYCVVHANLTEEEQEKYGTRDYVVTYCSMCIKALYAKAKMRLVKFSVVNTL*
Ga0111098_10416	Ga0111098_104162	F003460	MPRASRDERYFHDLQHAYEALHEVLMPRGLYADVGMMLVVNLRRSSELRDVSIELVIRSRSGGSPVWRASEGLKIPGRMKMRSVSSALFGLMMRAAYDIEAQISLPGDDHPRPWIVTYLPLDEGPGARASARRAGRARKLAQTARCSYNVT*
Ga0111098_10489	Ga0111098_104892	F069691	MTGSPPSNLTVEQILAWALLALHTNGSSQTVQEGGETLPRFSYALAPNAIILRANLPLQQGWPGAASPLWTRVGEAVQGGLPTGF*
Ga0111098_10645	Ga0111098_106451	F003460	MPKASRDERYFHDLQHAYEVLNEVLSPRGLYAETALLLVASLRRPGELRDVSIELVIRARAGGSPVWRAVESLRIPGRMKLRSVASVLFGLMMRATYDIEAQISLPGDDAPGPSGRARILPRS*
Ga0111098_10668	Ga0111098_106683	F076662	MPKASRDERYVHDLQHAYEMLHDVLAPRGLYAESSLLLVVNLRRPAELRDVAVELVIR
Ga0111098_10796	Ga0111098_107961	F072057	MVGRIGPGSDAKNGQGDTFCRTVIAALAAMLALKLCEYIRKW
Ga0111098_10839	Ga0111098_108391	F041593	MTSKNLHNELYKLAIAMAKYNGKGVKQNLDYLLSQEQERNKDNSDCIQQSLP
Ga0111098_10839	Ga0111098_108393	F015070	MEKLMETGFIGVADYITRQESWVSPDWKALNKEFFTVVVDNLLDFLWDYYMPL*
Ga0111098_11075	Ga0111098_110752	F040513	VDALLTFLDFLVAELEYHYLLKRADSLCDYLDYLNAVISLNEIRASEEYRKLQ*
Ga0111098_11203	Ga0111098_112032	F069691	MIGTPPSNLTVEQTLAWALLALHTNGSSQTVQEGGEVLPRFSYALAPNAIIVRANLPLQQGWPGATGPLWTRVGEAVQGGLPTGF*
Ga0111098_11558	Ga0111098_115582	F077497	MDKEQINKLEEILERHLFGEVDNTDYELKRMQVIILYLIYQKLKNIDEKLNAIDQSLFEMANPGLFE*
Ga0111098_11956	Ga0111098_119562	F040513	LDYLVAELEYHYYLKKADSLIDYLDYLDAVVSLNEIRQSPEYRNLR*