Scaffold Ga0105744_1060629

Overview

Basic Information

• Taxon OID: 3300007863
• Scaffold ID: Ga0105744_1060629
• Source Dataset Name: Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459B_0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 932
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location

• Location Name: Oregon, USA
• Coordinates
  • Lat. (^o): 46.2335
  • Long. (^o): -123.9142
  • Depth (m): 15.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046070	Metagenome / Metatranscriptome	152	N
F090610	Metagenome / Metatranscriptome	108	N
F101084	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105744_10606292	F046070	N/A	MNLKRIKELRNVMHDAQSKMDLISKRVMQGGLSLDQQILHLDNFAANQTRHMLGNEELYKLLKNE*
Ga0105744_10606293	F090610	AGAAG	MHKVWRLYLIDNKSITEISKKLNITKSKLKIQYGLK*
Ga0105744_10606294	F101084	N/A	MYRDDLVYEFNDDMWLMYHDGTVDNEDDFYNQKHEWIENKVIYPHECKEICDKLDYDIFEEHDIYGKANNWSQAAYAAIYDLLNDHNDALNYTEMKLQEEEANA*