Scaffold Ga0104322_142691

Overview

Basic Information

• Taxon OID: 3300007819
• Scaffold ID: Ga0104322_142691
• Source Dataset Name: Permafrost core soil microbial communities from Svalbard, Norway - sample 2-1-2 Soapdenovo
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Princeton University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2856
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Permafrost Soil → Permafrost Core Soil Microbial Communities From Svalbard, Norway

Source Dataset Sampling Location

• Location Name: Svalbard, Norway
• Coordinates
  • Lat. (^o): 78.11096
  • Long. (^o): 15.55294

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012131	Metagenome / Metatranscriptome	283	Y
F098780	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104322_1426911	F098780	N/A	VTGATHEKGTNKGKHYEHRGRFTDTWILKNGEWLCVASHLGLLSK*
Ga0104322_1426913	F012131	AGGCGG	MHTHDAANPTADILLLEDNNMHRANRYITSLFLTAALAAPVALMAIPAPQEDHHQNRVYDKEHKDYHNWDDNENKAWGQYRTDNHKDSREYSKASKKEQSQYWNYRHSHPDKG*