NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105663_100064

Scaffold Ga0105663_100064


Overview

Basic Information
Taxon OID3300007797 Open in IMG/M
Scaffold IDGa0105663_100064 Open in IMG/M
Source Dataset NameHuman stool microbial communities from NIH, USA - visit 2, subject 764325968 reassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)146637
Total Scaffold Genes191 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)70 (36.65%)
Novel Protein Genes19 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (42.11%)
Associated Families19

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042095Metagenome159N
F050794Metagenome145N
F057001Metagenome137Y
F058555Metagenome135N
F064725Metagenome128N
F075481Metagenome119N
F076653Metagenome118N
F077313Metagenome117N
F078005Metagenome117N
F078006Metagenome117N
F080673Metagenome115N
F083451Metagenome113N
F085718Metagenome111N
F089590Metagenome109N
F089591Metagenome109N
F093883Metagenome106N
F098313Metagenome104N
F102167Metagenome102N
F106193Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0105663_100064106F085718AGGAGGMVIEFDFEIYKNGDYDKVYLRNGKEARVLCDNGKGNSPMVVMIEDDKADDYIILRYNETGRRNINGQSGLDLMLSVKEREPELWVVVISYMDNKDKRQKMVLPNFFSRGIRGYIYLQGSSKSNVSYYVGRLEKDGCFDELCEKIRVKRDRIYNMEIISLSDDETAV*
Ga0105663_100064108F078006N/AMEDNILKRAAAELKEAGCRVFAWQDDTYNRGWSKGDYIMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSRGSGSGCGIKEEATFDLATALDVLNEPLPRWCKSYGVYPEQYKDIDRWYNSDNYNKKIFKEI*
Ga0105663_10006411F077313N/AMGKYVIKRKIPKYQEAGEVGSYMLGNMDGIQGLGMEPLVNTNKGLPAQASPLGIYSMDTPDRLMDKYDTAFEKKDMNDMFPASFKGSLQRIAENYQDNAITFNNVTVNDVDKSKTGSGETDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGVKTANVVGTVMSGIGGVLGLARNVFSGMASEQGTRTNIRLAQEREARQRRQSQMRYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVEQPGEAPMEAMGQKHVDGGTPVSLEEGTEVITDDTTIESDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALDKLKKNDKIDDENTRRLNASVLSKAINDSNETVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEDDVAEAKKELLKKVAGIRQKMEKGGSSLFDYLLTFRPVENKYNNKDNTFGYQRQGQDGSYGGINADERLEYYKTFMPLAYDAYMSAPKATAAKALQDAIYNTTGGWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKFGQYSSSRPMIGLDVVTEDQHKALNDAGITHFSQLFSDKNKDIVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMNIGDVEDPDVKLDMPELIDASTLPKTNTNTNTGKSDNNRGGRNIVGGGLDFPEVFRMTPGPVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGRYINEVEQGNVAQRTWADNVNSQSWANTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG*
Ga0105663_100064113F080673N/AMDEIVKLQDEILSYLRNNITKDEAYYILTTDKEMIEILISDKKDGSKRIKILDMEYTIEKDDMLLLFDTDGIIDECLLTSSHIGINMYFRRQDIRDILSKKLEVMEYRYIKIQVDNIPVVEKHRVILDLTGHRVDRDDRDKIDFMFIYYMARLCE*
Ga0105663_100064120F057001AGGMTSKDLNKVQSEVKKASEKTLTGAVKAWCQLFKSGKEVNEILKENDIKVDKDIVPALVSLAKEKEVVIQLCKDILPRINNTFCAYKEIEREYLDKLDQDKNVKMTVDKIESIAILGTTHKRFGYNEPVEYDGGVYYDVFNGSDKRIIKCAVPIKRYTYNLIAKCITYYLTHPKNER*
Ga0105663_100064129F102167N/AMDINQIKKCLPSGWDVVDLIDHGIIDLDIMNGKMMGEYVAVLMIKSYDKTNGHILTTFSFHDKDMDKLRMLIGNAIMAVGYRNNPLNGDGNTAIK*
Ga0105663_10006414F050794AGGMTEFNERLSDKIGIECTMDILLPTDDDNANIIIEYNGIIKKLMREAGKLELDTDAIENMMRDLLNELKDDVDLNILIFDVTQLLIKYNLFRLDAITEQEFKDSFVRMDSRNMEIKKLTLSDIKKVVMMMEDRYNYISSI*
Ga0105663_100064144F058555N/AMFGTKITLLQKMKSNFDKILTEKYIPRNIQAKKDELGCVKLPAGSLICPVDFKPVTNKEGKKVTAIKYSLKHEEYHGSGIRISDECKMAMIYLIIINVLKHVFLRKRMQDGNRDQIEINTNDFIDILSDGCAYFCYRHVLRDSHEDINYQLISLKAWAEGEIRIALSDIVKYKYKASKVPRIKDMFVKKGESIYTCIDKNLDSDSRRRMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKKLIGIGMREISQSTIYRYISMFLDMCKKSISDLYDEVKKNNGVVNTKDRKNVTIGCLRLLYKGKYMHILISTEYIRDVFLGEKSSEMSKAG*
Ga0105663_100064153F093883N/AMEEDKDIKKEIRDYLKEEADTHIRHWIAIKRESKRLYSDIEDRTKKIALKSSSLIKEDDFVALHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDFDTTYASTAKSIMEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYELLMKQYNEFKDMKANATGKTKADE*
Ga0105663_100064160F089591AGGAGGMTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLIRYYLNRKDDETIRSIQTLLVYWESLNKGNHIDDPESTSFGLPDDYLWFSNIKGSFSYKGCKVGDFVMWEAKNENVHELLGDDSNKPSFDYRETFYTIGDGKVVVYEDGFRTDEVRMTYYRNPVRVDLTGYINAAGMQSTDIDPELPDPLVEEILDMVAKQFSLNENELNRYSMDKDNVASFK*
Ga0105663_100064167F042095N/AMAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGQDNYRIIFRSLAIQHMKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTAFPIIDIPGLEFLVVSHTMYVNDGIPVDKLSRSNKLIYIDLSNVGQRMTVIPEAITSKTEVYYLNMFNILDLRDIESSGIRNVKNMKNLQTLKLSSCYLDRYIKEFNDLPKLTLLYMAHGPSDMWNYFDINTLPFFEVDKINPNITDLFFLNDWVSGERRTGWNDDNMSGRGLEHLTSFSAINSNSLRMDKLPDYIYEMRAITRFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYDTIFPTENQRPSGTEQAPEGFVKGQSNGSPATPMEKIYVLKNNYAQKWTIKPA*
Ga0105663_100064169F089590AGGMKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSIRGWKIRRSRRRRFSFKRWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILAVTKYGVYIALVGYVMLFLNTIGDAFSDAYLVKVFKAVFKRINVFKMFSFSKNIPDETFDDIKKIADDEVKDKS*
Ga0105663_100064170F075481AGAAGMRLRISLRAVFCLGLLLSLSSCGSRRQVSETSIDSRLISRIETMIDEVMDRKIVEIKTSDLNADIVITEREFDTDKDVDPTTGERPVSSQTDTHIVIGRRDSTVTADSLGIDKTITGVKDIDKKTDIKHKDVDDKKESKWPIAVTSISVLLILLGLIYLLKKMKVL*
Ga0105663_100064176F106193N/AMGCNTCKEKALKAERERIERSMMNRVSSTVISDREYASKSTAGCMVMLDPLKTMERDVVSIYKQTRTIGDVGIVYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRAIYIKP*
Ga0105663_1000642F064725N/AMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGSGLRRDCAADKYRDKYAWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNAFDKYIKLI*
Ga0105663_10006428F098313AGGMREKKFDFVIYPLDLIITVGLDYKTLCDRFENMEPEHNGEWGNKEDMDKEASFVNLVKDRDDDGRFAILWNFSSDDDITIKNTCHESFHVAMSVCQFCNMSLGFKVGEDEHAAYIAGFAGGCAYDFLYSNSTE*
Ga0105663_10006452F076653AGGMTIRDKYFGWKDIFFDRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYGCEYAPIDISSALQTLIRLTENAKHMFEDQPGVYDMIPYRGFFLRDDFLSGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDINSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRENKFKMTDKVKRGANNWYYSGGTISCVDSFLGKKYRKNLRTFIYRGIVFFLDRIWHTPLFEKMGVKMKYNAYYCYAATSGIWYNKGFKKRLAKRFNESLRGGGDLFGANLACMVCDHKDIDWEALRLWLDKYDEPTDKGMVNSPIQFMYLYLYYAFNK*
Ga0105663_10006464F083451N/AMQKDQIMEEKDVLNLLMSRKDIRKLVEKSNECYSKMDFVGAMKYRKEIKDIVDRESKIMLTKSESLVSLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMTECKKEIDYLMKGTSKSFQISFAVRSDELREMIENMVGDNIREGYDMFKEEAKMTKETDRSKIEEFNKKLDHDQM*
Ga0105663_10006483F078005N/AMKKSEFVKKLEKIIDMVKTEDDGFEYGGKVIFYKEDDDNCEINVKNIEMNLRVEANVMAGMDDMDFTCLMSEVYKQKAVKAIMMEKDDDEDN*

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