Scaffold Ga0099795_10001278

Overview

Basic Information

• Taxon OID: 3300007788
• Scaffold ID: Ga0099795_10001278
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5351
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000232	Metagenome / Metatranscriptome	1513	Y
F083762	Metagenome	112	Y
F098730	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099795_1000127810	F000232	N/A	MKHPKPSKRAPQTRPPQTHPSALAVPSYHRILVKHGLIEKTRSISDAYKLFLKVGADPEVEKLRRKVAHGDKIKHVPALYLATAMALQGMTKHELEALKLRIEKKAAIS*
Ga0099795_1000127811	F083762	N/A	MSAKRTTGRWVVYERRDGEFIFLSRPFTTRAQAEKERDKLKGTFTYKVSLGVGAVAKK*
Ga0099795_1000127812	F098730	N/A	MLCPTAKVLFENYANAAREQFEAADALATLVGRHGQFEEAKKHAEQAHEKCSAAHMALEKHWIEHSCREGIGNGS*