NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102955_1142857

Scaffold Ga0102955_1142857


Overview

Basic Information
Taxon OID3300007784 Open in IMG/M
Scaffold IDGa0102955_1142857 Open in IMG/M
Source Dataset NameSalt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_D1_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)649
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location NameSouth San Francisco, USA
CoordinatesLat. (o)37.4971Long. (o)-122.129Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054048Metagenome / Metatranscriptome140N
F099208Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0102955_11428571F054048AGGAMTDDNNINDRSINPLIRIANTLDEILRLVKKDMEESKARITEQWDKQLDKREVVKRDENFNYNQL*
Ga0102955_11428573F099208GGAGGMGLVVNKKKEEFIGQGFSKKEAKIKAHEWCATTNTCRGCSTVVRSDWWSWKRGYCKDCME

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