Scaffold Ga0105674_1360201

Overview

Basic Information

• Taxon OID: 3300007776
• Scaffold ID: Ga0105674_1360201
• Source Dataset Name: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS915_Marker113_DNA CLC_assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 710
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Vent Fluid, Hydrothermal Vents → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location

• Location Name: Marker113 Vent, Axial Seamount, northeast Pacific Ocean
• Coordinates
  • Lat. (^o): 45.9228
  • Long. (^o): -129.9883
  • Depth (m): 1520

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002453	Metagenome / Metatranscriptome	558	Y
F015479	Metagenome	254	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105674_13602011	F015479	AGGAGG	MKILIILGTGAILSFPMDKSVIPDCFSQGYSIMQKISTYQDTGNRDQGWYLNGTKIHVTGFYCQ*
Ga0105674_13602012	F002453	AGGA	MAPIEYPTLYDSWYKCSRDAHVESIKLMSRMGYKNVNDYKVGTNYHCKAVRTY*