Scaffold Ga0105668

Basic Information
Taxon OID	3300007758 Open in IMG/M
Scaffold ID	Ga0105668_1024074 Open in IMG/M
Source Dataset Name	Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDPlume_2015_DNA CLC_assembly
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Marine Biological Laboratory
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDPlume_2015_DNA CLC_assembly

Source Dataset Category

Metatranscriptome

Source Dataset Use Policy

Open

Sequencing Center

Marine Biological Laboratory

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7407
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (76.47%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7407

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (76.47%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Source Dataset Sampling Location
Location Name	Axial Seamount, northeast Pacific Ocean
Coordinates	Lat. (^o)	45.9372	Long. (^o)	-130.082	Alt. (m)	Depth (m)	1500
Location on Map

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Source Dataset Sampling Location

Location Name

Axial Seamount, northeast Pacific Ocean

Coordinates

Lat. (^o)

45.9372

Long. (^o)

-130.082

Alt. (m)

Depth (m)

1500

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041251	Metagenome / Metatranscriptome	160	Y
F049037	Metagenome / Metatranscriptome	147	N
F049696	Metagenome / Metatranscriptome	146	N
F049924	Metagenome / Metatranscriptome	146	N
F060975	Metagenome / Metatranscriptome	132	N
F097503	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105668_102407410	F097503	GAGG	MDCDTFDYVVEIFEQKMIEGCIANEFKCVYTEETGEFVAEINGKFYVAMIREKK*
Ga0105668_102407411	F060975	N/A	VVAKHSEKFNKPKTIRDKKKDYYRPDVKREFEEAIEDISFDEQNKKDAIIIQYQDELARSQEDGWPYED*
Ga0105668_102407412	F049037	N/A	MEGGRACPDFKLFYDTGKITHHDRSPNWYIDMPPHTITVRELSERCGFGKETNKLKHWLGLKVFKLIEDPLGFYFLRHLDGAIEDLHEGKSSKRLRYAKAACSQVVLEAKARESAARSQDNVGAVVRRKMGRTITTVRSDEDSSEEKHKKWVKLSETMW*
Ga0105668_102407413	F049924	AGGAG	MRKYATQRLIAKDVPVTLKGLFDGQNLRFRGRGSRVKAVETVMKSRALRNKYGTGRGLLARFSQDLPLEFANRMSVYSRS*
Ga0105668_102407417	F049696	N/A	PMKIHTQKGKRRLWLEQQRYGLDGFAPGSSFKVTYHTDSIEIESDPEGSNKVFTRVKKASKLHPTERQFAIVSLHNSKLKAIFGDTEDGVDTPCRYEQMPGYLKIWPADRVAEFADKLAKGIEQQYEDAIAA*
Ga0105668_10240745	F041251	GGA	VKQYNINDVTEIAEAIKSGDRVENDIGTVIDGFFWFPEEMQWAAQWQKDEEQDSPYDYFAMLLNPDVFKDTEDEEEIMAGIEYWWHRSQIYAAAYLVNNKPLVASRYTEDIANDSLRDLVDMQHNVQAAFKAEGMEVGPEAKPHDIWKVVRTTAQYIHNNVRGVH*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0105668_1024074

Overview

Ecosystem & Geography

Associated Families

Sequences