Scaffold Ga0105552_1025954

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105552_1025954

Scaffold Ga0105552_1025954

Overview

Basic Information
Taxon OID	3300007743 Open in IMG/M
Scaffold ID	Ga0105552_1025954 Open in IMG/M
Source Dataset Name	Marine sponge Cinachyra sp. microbiome, Papua New Guinea CO2seep, Dobu 'bubble', cg4ads 200bp-25jan2016
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of New South Wales
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	698
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Cinachyra Sp. (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location
Location Name	Dobu 'bubble' site, Papua New Guinea
Coordinates	Lat. (^o)	-9.73665	Long. (^o)	150.867667	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F065466	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105552_10259541	F065466	N/A	VLLCLLSALVEVHSQTVPYVSFMGTNLPNHSYVNLTLVGRPEDGGDSVQCHTDLSTCCSGAQGTDRGDWYFPNENRLQFSNGPDDIYEERGAQRVDLRRRNNGDTSGIYRCDIETNAVHNESGHETVYAGLYASGGECTHM*

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