NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105552_1025954

Scaffold Ga0105552_1025954


Overview

Basic Information
Taxon OID3300007743 Open in IMG/M
Scaffold IDGa0105552_1025954 Open in IMG/M
Source Dataset NameMarine sponge Cinachyra sp. microbiome, Papua New Guinea CO2seep, Dobu 'bubble', cg4ads 200bp-25jan2016
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of New South Wales
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)698
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Cinachyra Sp. (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location
Location NameDobu 'bubble' site, Papua New Guinea
CoordinatesLat. (o)-9.73665Long. (o)150.867667Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065466Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0105552_10259541F065466N/AVLLCLLSALVEVHSQTVPYVSFMGTNLPNHSYVNLTLVGRPEDGGDSVQCHTDLSTCCSGAQGTDRGDWYFPNENRLQFSNGPDDIYEERGAQRVDLRRRNNGDTSGIYRCDIETNAVHNESGHETVYAGLYASGGECTHM*

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