Scaffold Ga0104988_11020

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_11020
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 110467
• Total Scaffold Genes: 138
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (23.91%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001009	Metagenome / Metatranscriptome	807	Y
F001840	Metagenome / Metatranscriptome	627	Y
F006260	Metagenome / Metatranscriptome	377	Y
F009604	Metagenome / Metatranscriptome	315	Y
F019824	Metagenome / Metatranscriptome	227	Y
F020882	Metagenome / Metatranscriptome	221	Y
F023346	Metagenome / Metatranscriptome	210	Y
F039627	Metagenome / Metatranscriptome	163	N
F045085	Metagenome / Metatranscriptome	153	Y
F079812	Metagenome / Metatranscriptome	115	N
F091907	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1102038	F019824	N/A	MDKYITDNFTGSIDDLLNHCSKLDTAKVEEQVKAEEKEACIQVIMKELECDEAEAEVIYNDLVLAEVKETVDKMVADGLLYVSGHNEDGEPLFQLTELGKAVRKELGDSK*
Ga0104988_1102041	F091907	N/A	MNKNKTGRKATAVNEITDRNFTIVDLININANVKAPTIRMHVKRSVTAGRYKISGSQKTGKRGKPSIVYTYDATPTGATTTTVESTQTSAN*
Ga0104988_1102042	F079812	N/A	MSTKYVTDSKSARIGYVKDSGSVIYAHGPNGENVGYYQKSTDTTFDRNGKRYGFGDLTNALVFEAARKI*
Ga0104988_1102044	F039627	N/A	MTASFYKTVYQRKFNELPRWKKLAIVEDSERNNWSGLLTEFIKAVIEEAEKEYANSKPNVAAAPVEPKKDLENKIKKTFKKKI*
Ga0104988_1102045	F009604	N/A	MIKCGCGNEIHPERYELGYKICLSCGENSAKRSQKFGYLHFGHKTAGSIVITSKKAFDNYSKVSYRKGKASNMAYASRLSTSF*
Ga0104988_1102046	F023346	N/A	MKTEIDTVSKNIILTYARKIRNVQKEQIDPYIGLIENELITLFPELKDREDNALNWAYDILNAESNTEVVETLTRLEKIITNERKEKWVCNYCGKNTYNDDVEYLFGTNHIGCALEEDIKNREHSDPDYILDARLRKITELESELRNTKRELVNMELRLEHLRSDYPHEPTN*
Ga0104988_1102047	F045085	N/A	MNKIIDLTVGIIFGTLFALALILVLMIFFAVLIPFLFYFTLKEVLKYLTNTK*
Ga0104988_1102049	F001840	GGA	MKDQDSIFLICDCFEHGLLVEKFKDEEEVSLSLFERGLNGRTLCWSERLRWCWQILRHGKPWSDFVILNTENQKQLKDFLE*
Ga0104988_1102051	F006260	N/A	METELTIKDKVINPIIIQHDDLKFDGKNITIPRYYIDSLCEYIKDYKTDGELQADIEDFQAFRSFLYDVQEYKNGGN*
Ga0104988_110206	F001009	N/A	MASNLNSEFNYRYQVIGSTPWEKLKTLKGFLVGRKRAAVLEQVADLKYKAKLAELKHLKELPALPHVILNLEAEILELESHLDDQKHAFELNRQEIKILENLIAELYTIVEPTRIPGYTDDQMFEANANNEFTVTIGREIQAEIIANGRPSPAKLLNAMSNPQTLESLKLVGLVPKETLLLEQKDIVDALKLNNINEPKLIQ*
Ga0104988_1102081	F020882	N/A	MKKLKELGDTGDRMMQGLPFSQGGAVSGASDLSTFASPDVSQDPNHFGTLTDKSKITVSAKDSMSKVTPFGPYTGQNPRDYVGDVQQIKYKVTPDEVIMGIDYEMKKLVLKDKQVAKQNVVNNLKKDPQYYSKLHMLDITDEPEKIDETDYRTPQEKAIAEIMRNLHETKKQRRNWN*