Scaffold Ga0104988_10971

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10971
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 52305
• Total Scaffold Genes: 116
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (30.17%)
• Novel Protein Genes: 36
• Novel Protein Genes with Ribosome Binding Sites (RBS): 15 (41.67%)
• Associated Families: 36

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007359	Metagenome / Metatranscriptome	352	Y
F010746	Metagenome / Metatranscriptome	299	Y
F010897	Metagenome / Metatranscriptome	297	Y
F011914	Metagenome / Metatranscriptome	285	Y
F016115	Metagenome / Metatranscriptome	249	Y
F016774	Metagenome / Metatranscriptome	244	Y
F020860	Metagenome / Metatranscriptome	221	N
F022820	Metagenome / Metatranscriptome	212	Y
F024040	Metagenome / Metatranscriptome	207	Y
F025679	Metagenome / Metatranscriptome	200	Y
F026210	Metagenome / Metatranscriptome	198	Y
F027756	Metagenome / Metatranscriptome	193	N
F030670	Metagenome / Metatranscriptome	184	Y
F032536	Metagenome / Metatranscriptome	179	Y
F032548	Metagenome / Metatranscriptome	179	Y
F032572	Metagenome / Metatranscriptome	179	N
F034827	Metagenome / Metatranscriptome	173	Y
F035215	Metagenome / Metatranscriptome	172	N
F036564	Metagenome / Metatranscriptome	169	N
F039478	Metagenome / Metatranscriptome	163	Y
F039497	Metagenome / Metatranscriptome	163	N
F044916	Metagenome / Metatranscriptome	153	Y
F048101	Metagenome / Metatranscriptome	148	N
F048121	Metagenome / Metatranscriptome	148	N
F048123	Metagenome / Metatranscriptome	148	Y
F049419	Metagenome / Metatranscriptome	146	Y
F050171	Metagenome / Metatranscriptome	145	Y
F062446	Metagenome / Metatranscriptome	130	Y
F062447	Metagenome / Metatranscriptome	130	N
F064403	Metagenome / Metatranscriptome	128	N
F071966	Metagenome	121	Y
F071967	Metagenome / Metatranscriptome	121	Y
F078229	Metagenome / Metatranscriptome	116	Y
F082149	Metagenome / Metatranscriptome	113	N
F104482	Metagenome / Metatranscriptome	100	N
F104483	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_10971102	F010897	N/A	MKLINTTSYCSDKLKEIIKWCMPEGVFLKDIRKIDFGNTKLNWHGRAWGSMRVHIGVPRYGKYLRPYNTGGRRGYLNVETYSWEEGLIELIAHELRHLYQWKKGKYYHGIKKIRKYNMGTRAKLCEVDASLYAKRKVREYRKGNFKLNLV*
Ga0104988_10971105	F020860	N/A	MEITKAKKLKEGGYALYATDPKTKTETQVGYIGENLTLEAWLPKGVKIENS*
Ga0104988_10971106	F016115	GAGG	MLGRDGDVAIYKKQLDEPDTEAFNYEVIAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWAFTCISREDADKRFIQLQEKLSAYVATATLPNGEKRGRGRPRKIDLTKTELVVS*
Ga0104988_10971107	F010746	N/A	MTYKCAVSGEAIPPERVEALQVLGVPESQWTKKEYSQTKKLRAVYAGDDGSNDIVICDAVDGGSMFDNAIVAEVENES*
Ga0104988_10971112	F007359	N/A	MKQNLGAHWVIGIKGNKDEIEQFHNRVYNWGGTNGELQWMSNDFAYFWITLEKLERVMFKYVMSSLSDKLGKKFIGAKGGLKAVAMNRIKNTIDNIPTENFVRTAQVEDIYSLGTISAEKLDHDS*
Ga0104988_10971116	F022820	N/A	MKSENRISKIFEKRVLKDEDPKLIAEIEKHLAGLEVVWHKWVKAHPNWKEQDD*
Ga0104988_1097121	F071967	N/A	VSNQNQALAICSEFADEYGIDTHDNETIVVYINSKYVNELKNMLDKKDYKLSTFQVYGKDALVNFIPKSRKEKDSDI*
Ga0104988_1097129	F039478	N/A	MLKKILDFIDGVFEEEKEQPTLGTLYKLKGEDLPFRYIRFTNDFLSNKPVYHFKHHQLKEYKLNDLSKVERKANQKEINIYNDIKDHVNKVAKNFKS*
Ga0104988_1097137	F050171	N/A	LTKKEIICNINCMGLFNYIKVDQDLPLNDELKALNIDFKKEEFQTKELEESVMSTYIIRDYRLFELKITSHWEDNPDYVKDGTRFGEFFNKNKLVEDSREEVFRDDYTGTFTFGAYISGETKESYDYFPDWKCVVVQGLLTEISLIKPIEKNSSKQRIEAEESFKKELDDHDRKMKCPVYSFYFKYYVKTMNFIEWKVSIGIVKIINFLNWLQWKGIRKVIKILTPR*
Ga0104988_1097142	F082149	AGG	MKLGLHIDWCIGRWFGRNNNLEIRVTLPTISLGYKKEDDDKWFGFKFNLRTDISFESYEYGKIFSLILFGFGIKVSKFNL*
Ga0104988_1097143	F039497	N/A	MSEEDNFNCKAGNQLRDTLYKDILRYAHESDMTAYQVIGVLESLKFDLLNAMRNVDEQGDEDEI*
Ga0104988_1097147	F104483	GGAG	MNKKIIDKIDLVIEDINYLQELIDFDTTDSSEYDLDSVINLLAELRGRVANQQDEVEKIDLKQL*
Ga0104988_1097149	F024040	N/A	MNIYVTGHNWLAKVDLEDSITKNDRYAEATTRAIESVLDDEEKQGVELKIMDYDDYGLGIITLTYDEKDIKNEGEHRVMLTSNILANAGRWEQYKFLKDYEEKCKEEGL*
Ga0104988_1097150	F062447	AGGAGG	MKHKIFWENNSRIKGIVPAEQIIKKTQTHNFPCEAVTIRMHDLNSKNPVAVAYFHGKESQHIGWGGQNHSFAETKLIVTFNKEKEEYGFNGAIKSFSLQDLKEVLDSVREVLNKV*
Ga0104988_1097151	F032536	GGA	MSQKQTFEELMRSFRFHKNPILNWVLGNNNYLYHTFLNIKWKVKNVLQKLTRGFSDSDCWNLPQSTAKFMLPRIKHLRQNYHSLANRHHLLIDDKIVPYIGKEDNFEFNEKLGSYTDKTTGLGISLDEKEYEYILDEIIFALQTILDEDNINVSLEEVYEVYPQGFDPIKDRQMFLEKQEDGTYLVEFERKENFQPDYSKLNKAYERQRNGLILLGLYFKDLWD*
Ga0104988_1097153	F104482	N/A	MTSEEFEKAMKAQGRLISKVYYRITFKGMGLYILNSFKFKLFPKFFYINGKYFTECGFNWLGWIFEFQWNR*
Ga0104988_1097154	F048123	GGA	MKPRYDFTKGKLISYDGEIIEFADSALVDKYPDQVQEIMDLFDFKKGEYLVTDESCIRDFEKQNINPKKLAKFKKKYKFSLTNKSNISKIAERMYNFRPF*
Ga0104988_1097155	F034827	N/A	MKYTITSQDKEALTEFDQIKEGEVFSFFDPESVQRGNHSIYMKIKVPNTTSVNILDLGDGKAYDFSAKKRNTINDPDEKQGNRVYKLNAKINIVVL*
Ga0104988_1097156	F078229	N/A	MSKIKYTYYIEQDKDKDGNLVQGWSIYKTPLVKTIKVKTFKKLKDADAFLDQYESN*
Ga0104988_1097157	F030670	N/A	MKVIRYIKELEDEFGESLEKWAVYEEIQKPNYPHANFIDAKILKTFPSPYHARNWMENDGKTN*
Ga0104988_1097160	F027756	GGAG	MKLKDLIDRKILYLNFPINRYAIQEGKVTEISPSEKCIKINTDWHLISNIRIIELFTEKERPALGFN*
Ga0104988_1097161	F032548	N/A	MKHNQGMEKAIRLLEELVNQADEDCPQDCRTMHFVNALEEASEFIMEYKNTK*
Ga0104988_1097162	F036564	GGAG	MKMGRVCLDLNYIVDMDNQQMVERAVECLYEDLMQGVKYGNITNWIDIIEDKNAKEDMIPEFLLEKEDE*
Ga0104988_1097163	F064403	GGAG	MNNGIIRHINPRDMILENLKKAYLKEHPATLVDRILGYLNNLTDHQLCNLYSEKYETNPKYIAEQFEFKF*
Ga0104988_1097164	F044916	N/A	MGRKKIEKSRIEKGIEKEEKTFALMAKKIVDAIKDEKELRVFAKTSLEILYKDNPNLFADHAKLKLKKK*
Ga0104988_1097168	F049419	N/A	MKLPKLNILDLLTTYIFFGLVYGAVVTLTWNYLFEPTFNIHLSFLQGFGIHLITRILFGNTNTNYISNFYSPKTPDLDKIDSYLKEIQEDLDKEADEVEKQYEDLNKKD*
Ga0104988_1097174	F016774	GAGG	MPPKKPKIEFLTDHLASLNHWRDQLLALEKSYYSKDPEKERTCRNMLNKYLDDVLEHNKNIKEKSKKKV*
Ga0104988_1097177	F048121	N/A	MNTNPTQYTWQVKATTGQLVVAPKSYPTLRGAKIASKRFANKTGGSVVSVSAK*
Ga0104988_1097179	F062446	AGAAGG	MKSKTIRIIGFVLYYLFWLIVAYFFVGCANTSYRTIPSAMSEDAQDYPTKYNMMDSPDGRRNPNAQINIFGATY*
Ga0104988_1097181	F048101	N/A	MSKKFKNIKDFLETCSEDEKEYIYDLYYNASVADLIDLLFEHLPADETIKEIEEYREEMEWDDNEAKKSNKLNRKCDCDFVGCEGC*
Ga0104988_1097183	F026210	GGAG	MINANPLNYDAKYPQTADTSVNEDAKMFVMERNEGKEVMFQIEDGTQFYGRIGYVPNSEHYCVVVDRNGTPWEWYVREEAIHFVEDTSTRI*
Ga0104988_1097185	F071966	GAGG	MLSLLGSEMNIKGYIFKPFYLLLGVLYFITLLALLGTLYIVLYIRNTLEITLKQLEKNRKKYSRLR*
Ga0104988_1097188	F011914	N/A	MITFNQIKALDENELTYLYYCLNTEWNSLNMGYDFDWYIMRAFKNNVIHKLLDKYSANLTDENKGLIMQILTKLEANI*
Ga0104988_1097193	F032572	GAG	MNSTYQYIANYINKPTIFCYIVDCVINQNPYLFTGEYNKKLLNKKVWVAKQVFPHCEPTQYTYFKTFKEAKATLNKWGAKWTRA*
Ga0104988_1097196	F025679	N/A	MTKTFKIGETALGGTIMVCIPKTLTTIFINVIDTNHGTKKLINQYIYYSFDRIRIERDLFQIVSGYWSDQILKWINSKWQIEIPKNII*
Ga0104988_1097199	F035215	AGGAGG	MKLRSQIVKEISDRIAEYKGLMVEHDNNQDAVHELESAVHELEHLLEWINE*