Scaffold Ga0104988_10939

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10939
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 40821
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (87.69%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Associated Families: 13

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008296	Metagenome	335	Y
F010232	Metagenome / Metatranscriptome	306	Y
F010612	Metagenome	301	Y
F015719	Metagenome / Metatranscriptome	252	Y
F022817	Metagenome / Metatranscriptome	212	Y
F022871	Metagenome	212	Y
F038155	Metagenome	166	Y
F046331	Metagenome / Metatranscriptome	151	N
F051888	Metagenome / Metatranscriptome	143	Y
F056557	Metagenome	137	Y
F067677	Metagenome / Metatranscriptome	125	N
F100395	Metagenome / Metatranscriptome	102	Y
F104514	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_109391	F104514	AGG	MIKENETVSIGWCDNGTTDGKFTEGLISIILAGANNGMPIASSIRVQGNQIARQRQSLLDHWYDKTKTDWLLWVDSDVVVDMNIWKLLHDTADKDTHPMVSGIYFIAKDRDGSLPVFMPVIFDDIDEYTVKYHHPLPPNQVLKIDMAGMGFVVMHRDVVTKLRKKYGNEVSFFAENDQKNEKFVGEDITFFRKCKQVGIPLHAHTGA
Ga0104988_1093913	F022817	GGA	VSKTAKHYLKNGKEYKGPIHKMNGQIHTGAKHTAASKVLTHRKPKKV*
Ga0104988_1093920	F100395	AGGAG	MTNYLFKTPNVEEGPAGNHRLFYFYKLNRGISIAKSGATYRQVRYPVDSDMAEYDEFYRGGYTHTVDDATRSALIAGNVGVTSANFTAI*
Ga0104988_1093934	F067677	N/A	MYLVTAWDFPLRLVLGEKSLSVKEIVMNKFSFENARVNKVWDNKNRFNLGILDTRAVAQPDGSYQSVFVASRIVTTANPDHLEFIRKNLVDTSDAVVNINGYMETKAGKKPGTWYDNLVITDIALA*
Ga0104988_1093935	F051888	N/A	MTSFALSSSTQSFSCSHENPATSLDTRDEYCVECNLLQEGSSAQYALDFQEINRSEQESEPSLSIDIPDEKGYGHQWTNRDGEYLDGAYDITDRPPGWLFLGKHVFPMFKQDELNAYLALPSWATICSTCHYQINKYMGCLEH*
Ga0104988_1093936	F038155	GGAG	MATTDRKNGKAYKKKPKVQKKTGKTISGYSPAKLAIRAQKRGK*
Ga0104988_1093937	F056557	GAGG	MYLDTGTMIGIMIALFTSILTIGYSIYIIKTQNEIIQRMSNATAARRKMER*
Ga0104988_1093938	F010232	AGG	MRNREELLKIKEAFAYAMLDMLDVYDELIGNAPRKLWETPEPSVNDLLKNEEESNA*
Ga0104988_1093939	F010612	AGGAGG	MLEEDTPQWEHTVWIMAKVRCRTTHINVDRAGDDALEDPSEWHVLEFDTGIKHSQEIIRVR*
Ga0104988_1093946	F015719	AGGAG	MYYTEVDGTEPTISIQVKDTKYTFTNDSLVRLIEEKENLRTELVQVERKLKSTQFDVKEFFQARYETDHHEIVCEVDDVNSLLKDIGSDELTKSWSATVTITATVTGVEAPNAEAAREIIEDAFEINLTVDGDVWVDDLTVESCYPEA*
Ga0104988_1093948	F046331	AGGAG	MSHSEAPISITIKTAAGSLVTVRASDGTELDNIVAQGLDAITSATTELEKAIRGTIPTPMTVGQVASALGASISPIDNSTTTLGGRNCPHGKMTAIQGTGKDGSMYRGYFCPAPKGAFDKCKNVYLKTTDAAWNTFVPEQVK*
Ga0104988_1093953	F022871	AGGAG	MSELENVWDNDEKFWDFVGENRRMVGLSVSDNQGLDILNALRDIYLTIEKEPDSAMRMLTLLGTVIYASSIGEGKQFTDEIQVAAAMEQFDTNIKDILDEESR*
Ga0104988_1093955	F008296	AGG	MSEEWVQEYQLLVSSLASEYSKRYPMVEPQDIKQILWLWFVTHPVKYKEWSKLPAKDKEKLIAKSLRNAALKHCEKEKSQKSGYDLLDLYYYDSSVIEAFLPSIIAGSYEIPSKIKDLNFKMGKGEITDGNNWLVLRSDIEKAYNQLAEAKQNILRLRFTVDNCEWNELGKELNTSADGARMRVTRAVNSLIRHLGGWRTYVDMDNIETEEDDEPRES*
Ga0104988_1093963	F104514	AGG	MIKPNETVSIGWCDNGMVDGKFTEGIISIILAGANNGMPIASSIRVQGNQIARQRQSLLDHWYDKTKTDWLLWVDSDVVVDMNIWKLLHDTADKDTHPMVSGIYFIAKDKDGSIPVFMPVIFDDIDEYTVKYHHPLPPNQVLKIDMAGMGFVVMHRDVVTKLREKYGNEVSLFAENDQKNDKFVGEDISFFRKCKAAGIPLHAHTGAIAKHMKTTAWDMDLYALFWSMQHVKDQLKAKQTQGE*