Scaffold Ga0104988_10921

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10921
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 39057
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (82.81%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001507	Metagenome / Metatranscriptome	681	Y
F005558	Metagenome	396	Y
F012770	Metagenome / Metatranscriptome	277	Y
F020863	Metagenome	221	Y
F028458	Metagenome	191	N
F030732	Metagenome	184	Y
F033006	Metagenome / Metatranscriptome	178	Y
F046323	Metagenome	151	Y
F079979	Metagenome	115	Y
F105020	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1092111	F001507	N/A	MNATETKPYTVEQLINEIYEDNYSHLEFEWNMGGEPCECKICTTLQTIIKYRGE*
Ga0104988_1092112	F020863	AGGAG	MQTKMEDLHRLVGVLEELVKPLLEGEEVPEAYESMKRPHLVLQEGSKTYGRAFRIHFTGGSKYGSGHWEPRGFSDYLGGTKAEAERTLRSLIAGIRTGLMITERGNE*
Ga0104988_1092123	F033006	N/A	MRWVENNFFDHLDKFANSLGYENYEIAIPLAMVPWESPEDRDIFILTITGNEVQGGSPDTFKAGEVK*
Ga0104988_109213	F030732	N/A	MFVVTVMWDEETREVGWYDLKQECKECGAISTAPTPMDWRDE*
Ga0104988_1092130	F105020	AGG	MEHIHISKVLEFGFTETHDFKAILWGCSLCDATQDKPFEHEDIEIDHTNCDEDCFGCKVKTLQMNAGDATRDVSDKKWTGELSAYRDARAQGIQPAGTTHRHIEQAYAASEALNKPYDANTMPKAQDINKKSVEVLKEVGAI*
Ga0104988_1092146	F028458	GGA	MAKVNKGTVAIGWCDNGNTDGKFTEGMVSIALQAPANGIEITHSMRVQGNQIGRQRQVLFDYWADQIKTDWLLWVDSDIVIDIHVLAKVWDAADKIGKPVVTGTYFISKQNEGTLAQPFPALFHNVDEHTIQHVHPLPENQVIPVDSAGFGFVLMHKSVIPALRAKFPNQSLFAEQEGLGDKYVGEDIVFFRKMKEAGIPLYAHTGALVKHMKRFSLDADYYGLFWSWQALKKKIEQDKP
Ga0104988_1092157	F079979	GGA	MIREEEDDMTQEMRAFVLLEVKRETAALVEKILAAKVPVTDEWTDGLNAGLEWAVRILNKDKSAS*
Ga0104988_109216	F046323	N/A	VYETRGVKVVNVWLPEGTDLPKDWDSMSFKTQDEWLYDNQDEAHLVWTDEHEGEAVNVLPVAQLKAVI*
Ga0104988_1092160	F012770	N/A	MNIEEEPPHNHCHDCNITFPDSFALIDHYLDEDETFDPYYLLPSGFKLMLGSMLRFLFDNAENPAQIKMITQSTYVTLFASENGYDLVDELVEDMIVKSALQDFDRDLQQLLAEEPNDDEGGA*
Ga0104988_109219	F005558	AGGAG	MQEEEQLSWSELAELTHETQVDKFGWCMCEDTEPHEYPYGDCPKTGE*