Scaffold Ga0104988_10906

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10906
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 37936
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (51.72%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002843	Metagenome / Metatranscriptome	526	Y
F004049	Metagenome / Metatranscriptome	455	Y
F005206	Metagenome / Metatranscriptome	408	Y
F014610	Metagenome / Metatranscriptome	261	N
F016961	Metagenome / Metatranscriptome	243	N
F018915	Metagenome / Metatranscriptome	232	Y
F029366	Metagenome / Metatranscriptome	188	N
F058105	Metagenome	135	N
F078766	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_109061	F078766	N/A	EALSTDMEDGQQAMPEVGDEVVLDDVRGVLKKLENGEAYVEIRSVNGMPAEYENKDDKEMYSKKPMDKESMMKMAADYDSEMES*
Ga0104988_1090610	F018915	AGAAGG	VNWIYQILKVILDWLRETPPTDVQHGNAPKDLKADMAGRIADLPRLPDDQGGSGPFR*
Ga0104988_1090614	F058105	N/A	MNAHPTIIAAAKLLREKWPTCSTWNDDQLLNWIGIFNKVRQFGIVENEAGECVGVGAVRFLNSVAESEDINNNFRDGHIAWIEMVVGTEPKAVQTLWLAMMGMCSKNVTKLGGVRKGVSRLYDFDRYFKLLMNNRICYGRNI*
Ga0104988_109062	F014610	GGAG	MPIYTFENNGQCIEHIAPMGTDSVVLDGKRWKRQPVARFGVTGFASEPGLKDHVKRGFSRMEDRQGSRFESTFSKNQIRKIWDI*
Ga0104988_1090621	F005206	N/A	MTFKVDRSQAEVKPFAGPGEYTVVISACKDDGLDKSGNSIVSLRYKGPSGEVLSDRFVLKDTMMWRLQALISATEANIDDGAEFDFSVSGAFYRFLQGFVGLSLVITIEEEKYTDKNGQEQTALRVRRMKKVPSDNDGL*
Ga0104988_1090623	F016961	AGG	MSTALTIISMAALMPICVIAGIYVGHTLTIKSQQTTNEQSNRNRM*
Ga0104988_1090634	F004049	AGG	VNVPIGPVAFVFKHRKTGQVIVAPSERWHEYYDNKQDWEHTASINACMAIEYLINVKPKERNRYIRSLTEKV*
Ga0104988_1090649	F029366	AGG	MAVAYFVGQSETMEREGLEIGKRPKREGKAKGGRPEKVVTPEMKKTATRAAYLGMPHDRVAILCGFSSGSPAGWGQYLARHPDFARELEMARAKGEVEMQDRVLDASNGWQGAAWLLERTRGYVARAQLDHTTKGKELSISGNLLGAFGVVSK*
Ga0104988_109067	F002843	N/A	MIVPVPITTVQVNTDNSLFVTTGVDYDNSGSIVGSEITAQYTLYPGDSLEGQPPEVVKIANALWTSAVVEAYKAAQPKASE*