Scaffold Ga0104988_10905

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10905
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 37871
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (73.58%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006587	Metagenome	369	Y
F023292	Metagenome	210	Y
F066456	Metagenome	126	Y
F096871	Metagenome	104	Y
F100665	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1090524	F100665	AGGGGG	MAKPYIKVVSIKDTKAGECKLTLDMNQAGREVILQAGIQKALADYTVANSKKLTFWNKLQICWSILK*
Ga0104988_1090527	F096871	N/A	MWVFQLGLISGVMVGLELKFLEEDAPYIFSLVIDLFIIRLVIQKLKYVR*
Ga0104988_1090538	F066456	AGGAGG	MGFHINVYNMPRIENYAEAKGEFESRTAVRGGNQSVRRIGDRYEKEKWLRKDMLDGIEVYTAGYYDTDLVRFYPTHKEITLGNYPSTSTQYFVNWIGGVHISEFDHKRYVPSPFTRSPLVKNHQIECHVNGGHCMNATDWYKFDYTNTPLNIEQFETPVKYRFDASQMRELRLPYKKLLKYADTMLKLTNNEGVENDAELNKQIEEYKLHEYSKNLLRLCADEDKTHLAYYSVLRQCQHSVWQGYNGSSSNYKYACNIGIFKRFLDKHIKIENPQVLVEVN*
Ga0104988_1090545	F006587	AGG	MMDNNYEGTGFVVVGFIIGCCLTWAVMQYSHTQKKYSMNLKCIQGELYEEIRPNFYVKSHLECFEQRTLTP*
Ga0104988_1090550	F023292	N/A	MGHFSIFTTRHGVEMNLDQIKEYVTNQVKNYRVRDLLDNFDDSEWLAMYEQITRTKPWEVERRLIDWARHELEFFRYVLYTERHYEDLLIDKACIECMRCSDLCWQERRHHDRRTKNT*