Scaffold Ga0104988_10894

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10894
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 36688
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (77.61%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022866	Metagenome	212	Y
F048668	Metagenome	148	Y
F051082	Metagenome	144	Y
F063491	Metagenome	129	Y
F069436	Metagenome	124	Y
F070999	Metagenome / Metatranscriptome	122	Y
F075836	Metagenome	118	Y
F102618	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_108942	F022866	AGGAGG	MRRTIDSLLPALVLIRLGQELGTASPATQAVHDVLELLAAFLGLLTP*
Ga0104988_1089427	F070999	GGAG	MNVIQNTRSVVSLTAAAGLASNGTHTVSIDCLGYDLVSIDVGYRSIANTSAPSVVAVRESDTDGSYAAISGLVQGTDYTLSGVSNTATVNVTRIELATKARRRYLQVAVTPSADATANASNNTIVVAARLSKGEQGVDSAADANVTNRIVLG*
Ga0104988_1089438	F048668	GAG	VYVDICSQLDAAYGYPNPATKTERALPLVADLPTDKQGRVYLAVDNAYCEYNLPAELLPQMIAAGLVQEITKADYAAVVPQPPEG*
Ga0104988_1089440	F069436	AGGAGG	VTEAAKDTMFGILERWGFPTLVALGLAFFIRQDLLMPLLEEHRLTLKEVRETQREIADAVNEQTRLLYAIQGGKPPMRTVDVTVPDDGNN*
Ga0104988_1089442	F075836	GGAGG	VRFLVIMLIGMAGCIATLPSDPTISADLAVETARGVVQLRAKPDATPDGKPKPGDPCPNCDGRGYVGDGTVKVQCQPCNGGGKVLACPDGRCPQ*
Ga0104988_1089455	F051082	AGGCGG	MTVSEFACIALGMLFNVLTFALGCSVGVTLVKRKDSHNDRDRYEDEGVQYYRDDSQG*
Ga0104988_1089456	F063491	GGAGG	MATDNPYPAPAPLVLADMCAMHCWCDDIDDHSRKLLEWAADTIRCVVRMNARLSHDKEQLEGDNAHLFHLHYGPQKGGAA*
Ga0104988_1089464	F102618	AGGA	MITNETSPAENEYLAAVAGLHEQTVSKKPEPAVGDFVSGCTAGRRWSGRVEWVNERGEICVNTDGSWVYVPVADITH*