Scaffold Ga0104988_10865

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10865
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 34464
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (75.00%)
• Novel Protein Genes: 20
• Novel Protein Genes with Ribosome Binding Sites (RBS): 13 (65.00%)
• Associated Families: 20

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003393	Metagenome / Metatranscriptome	489	Y
F004475	Metagenome / Metatranscriptome	436	Y
F005348	Metagenome / Metatranscriptome	403	Y
F006844	Metagenome / Metatranscriptome	363	Y
F009882	Metagenome / Metatranscriptome	311	Y
F009885	Metagenome / Metatranscriptome	311	Y
F010302	Metagenome / Metatranscriptome	305	N
F012455	Metagenome / Metatranscriptome	280	Y
F015434	Metagenome / Metatranscriptome	254	Y
F017788	Metagenome / Metatranscriptome	238	Y
F018352	Metagenome / Metatranscriptome	235	Y
F019320	Metagenome / Metatranscriptome	230	N
F020851	Metagenome / Metatranscriptome	221	Y
F034574	Metagenome / Metatranscriptome	174	Y
F037701	Metagenome / Metatranscriptome	167	Y
F038086	Metagenome	166	N
F048773	Metagenome / Metatranscriptome	147	Y
F054581	Metagenome	139	Y
F074801	Metagenome / Metatranscriptome	119	N
F098668	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1086511	F017788	AGGA	MKKIIITSLLISLLIPTASAQAATKSLNTKGNKASCKSIKTKYKSEVMSKWSNGLASDQDVLKEIDLNIDMLAAKQKPTTGKIKTTIASWITAEKNTKIALDSKNVEAVTAAMNLKISSITNFDKLCNSIEK*
Ga0104988_1086513	F054581	N/A	MCPNCNTPLIPIIYGYSSKKYLDMHKEGLIFLVSTTYHTRHSPTSYCKKCSESFDIKVI*
Ga0104988_1086514	F020851	N/A	MSKDIVDLAISMTEMDTGLELSLEEREAMAKRILNKLKNC*
Ga0104988_1086515	F037701	N/A	MIKSKEWRVSNRVWLGVGFAPRRIALGFSVDRFNANVDFLWFWVSLEY*
Ga0104988_1086517	F098668	N/A	MKNISNLISASGAFNLDEALRAIAELHIPEGTLVHRCQEDKKPWPCPTIKAIEKELTK*
Ga0104988_1086522	F006844	AGGAG	MAKWEIEVIFEPTGDYMNFIYETDTEDEDAIFNEVSNQLSIVPDLVEKNEEE*
Ga0104988_1086525	F019320	GAG	MHTLHWIATKAKDRQEAFDIVTVSLMPNEDGNRMADWSDWHVVGGGRWSESAYKNSSDMIISYAEKPDEFKKIIEDIKRYRINYMNDKLTKLDNAFDNLKSDVVDYISNDCKLDDKRQFDFSRWEIKEAIDMLNSQWTPDSSFFDHNEFTSSLQYLEERLDKPEEAALHYLVPVDFHF*
Ga0104988_1086530	F009882	AGCAGG	MSTNISDAVTIDKLEVPYNPNLLVTYKAIAGTYAAPEEPTYLTSKVTDLEWDLHSARAREESLRSLQGTVRQLEENIVEWYDPNYSKEEVLVALCELFGINPVKEIEVQGTVSFSGTISVPMSEIADFDLNNVSIEAELSSYDYDADLTVDEVSLEDHY*
Ga0104988_1086535	F003393	GAGG	MIDLENDDTIQIVDYVKVDILTSGQLEIDDNILIADEVVSIVDIVSLRDGYTLEIVNDFGEREIIEVGEYDQFDLMMLQ*
Ga0104988_1086539	F018352	AGGA	MGKFKDTLMGILAHDECYGAGWQFVGNAIDYDVWACECNPYNIPADEIQEYHQLFNTKENA*
Ga0104988_1086543	F005348	AGG	MINSVMAFDCDECNGAGLIFWGNDLDYDVEKCECEDFALGTLFTSKEAN*
Ga0104988_1086547	F012455	N/A	MLKEIKNKIIRIQELRRSNAATPIPNKKNYSRKIKHKNKLQ*
Ga0104988_1086551	F034574	GAGG	MKITYTIWQGSLMKGRLTANSMKEIITLIDELNEGKPPLKFEYLVHEIKQVA*
Ga0104988_1086554	F074801	N/A	MSFLDNFEESLFPEEAGNGEIIQDEIPFEIEERLNKEAIEKYNERLKYMEEHGI*
Ga0104988_1086555	F015434	GGAGG	MESKYPDSWNRHSPKGMNVVSETIKSKKCCDTCECGQTEEQKFNKLMETQTSFEE*
Ga0104988_1086557	F009885	N/A	MTASEWAGFVLTLLSIGAIVLSGIRWYVKIQIKPIREAVEDIRSETKTNGGTSMRDEIRAIKKEQEDAKQLRKATSDKLDHMYEVLLDYVARSK*
Ga0104988_1086562	F010302	AGCAG	MVDVLLNTDDVVVIGPPESIDLLVDIGPQGVRGSKFIVGSGEPNALTASGVLFGNTLILNDMYINTAPGENYGYMYQYISQAGANTWVQVLKVSPAIYSSVETIAFTSGAAAITIPISNIVTVSGSPLTASNFSVQFQIEGANPIASSMEIPALAGAGTNLVINFYAVQYSGGTWSALTGSKTVHLFISIV*
Ga0104988_1086564	F048773	AGG	VPTVFDSDGKAAYVYNAANDTWYQVSGKTDISGTFEWTGLHTHLSNFTTAEASVAKKGNNNFLNPSARDAAIPSPTAGTICLIRQNSGGTTINEIQVYIGSAWRTVLPAPTGQTDKFLKSDGTISSWVQAPDAMTQVILMMGA*
Ga0104988_1086571	F038086	GAG	MATTRISNISNPVFIQDIKPTKTLSNIKPFNSTASNVALGTVLAIATLTNTVAVSDLKPIPSNFQKVDYAKVITPTSVLPFRLTLSNIGIEGYDPANPPGIGIQIIGFSNYIL*
Ga0104988_108658	F004475	GAGG	MTNWTEELNDKQKEDVWNFVVFTVKEIREQIARDIEATIPLWKSKGLLKSRRTQKAFEASAAIARGQNEQMNG*