Basic Information | |
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Taxon OID | 3300007735 Open in IMG/M |
Scaffold ID | Ga0104988_10826 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 32227 |
Total Scaffold Genes | 46 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 40 (86.96%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.953056 | Long. (o) | 127.81721 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F017468 | Metagenome / Metatranscriptome | 240 | Y |
F033006 | Metagenome / Metatranscriptome | 178 | Y |
F072283 | Metagenome / Metatranscriptome | 121 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0104988_1082630 | F017468 | AGG | MKHWEYHPEYVEDCFGCKGLGLQMNAGDADSRRMMSNKAFNKELVAYKEARSQGIQPAGTSMKKIQEAVKASETLGKAYNAEKMPPTKHINKKSAQIMREIGHI* |
Ga0104988_1082637 | F033006 | N/A | VKWVENSFFDHLDKFANSLGYDNFGVALSLSMVPWESTSDRDRFILAITEDEVQGGSPSTFKPGTVQ* |
Ga0104988_1082646 | F072283 | AGGAG | MQTMQDLIDAIKPILPNALVIDTDEGILIETNLELGLGGLLQPMETEGD* |
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