Scaffold Ga0104988_10823

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10823
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 32140
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (66.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003378	Metagenome / Metatranscriptome	490	Y
F006986	Metagenome	360	Y
F019319	Metagenome	230	N
F020354	Metagenome	224	Y
F040082	Metagenome	162	N
F077020	Metagenome	117	N
F078386	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1082322	F077020	GAGG	MAQTMKWGQAYSVLIDIGEVANGFVLDTDKLDNTTNVLDGTTNFVDATEYVLAVSIKRGRGSQIDNMQVGVCQVQFDDRQSGRLFDPANTASSWYAGTYGLAPRRNFKVFAGTAEMFVGKMTDIDLQYNMPNQSFCSIVAADGLYELARTTLLGFTPSSELTSSRVSTILDRAEVAYSTALRNIETGVATCGTVSYADNDNVLTALQNVAVAEDGRLYANRKNEISFDARIFSTFSTAVANFGGTAGTSIPVQEISVAYGQETLFNRVSIGVDGFGTAQVVSDAASQTQYGVQSFSYDNLPLVSLAAGSALAVNLLARYKDPKFRFDSISTSLNACGSAQFATLTTLDVGDVVSVTKTYSTGLPLSRTDNMYIESISHDITPQDHRIRLGLGQANVITNFILDTSTLDSTAFGLG*
Ga0104988_1082327	F020354	GAG	VLKKLKEELFALGFTLGASAITIMTLSGSVQNWALFFTFVSLGLHLAGVLTKGEKDNGTDSED*
Ga0104988_1082328	F003378	AGGAG	MEPTVKIKQNSTIAKFLDLGQRLLSLFLANALPAITTGAVIGISVSKSAIMAGAMAVIKVVSVLAEASVDGELTTEEIKEAFSGAKKK*
Ga0104988_1082332	F006986	N/A	MSAVFVIWHDAHSGSESWVNIKDLDKDPAIVETVGFILPTADGGKPGHITLFQSRTEDALDHVLHIPHGMIQRIVAIPTPTD*
Ga0104988_1082333	F078386	GGA	MRILTAIMATITAIATSLGIAYAAQAPAPPAWQYSSPQPISADRLEPPAETIVYAHGDCSWVPALALKAGWTSDQIPQLIQIVLRESGCCPNRAGGDMVDKDCNIKGQDGSNHSSDTSLLQINGLNYNPKRNPFAPICLQMKICTQEPLFDPLTNLKAGRLLYDYWEKAAGDGWIPWNICNRTSTCKASTKVRP*
Ga0104988_1082338	F019319	AGGAG	MTKKDIEDAIAFLEKIFVGPGSQDRLFEVINSLKQELSRRNKK*
Ga0104988_1082339	F040082	AGGAGG	MTADPYAMSQEIIELQTRVAELSTALETVTEQRDHAVDSAQSLFKELDSCHTMLMNLRSQMDRLRLHLQQGIEL*