Scaffold Ga0104988_10761

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10761
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 26932
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005558	Metagenome	396	Y
F023834	Metagenome	208	Y
F026830	Metagenome / Metatranscriptome	196	Y
F031792	Metagenome	181	Y
F093528	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1076118	F005558	AGGGGG	MNQESMSWSEIAQLTHATQVENFGWCSCEDNEGNENPYSDCPKEDK*
Ga0104988_1076119	F093528	AGGAGG	MSEEKSVTHVVTVVIHAGSKWNKVELFDFSGGEPTPLASGEGSNWRTALGEALSKITLSSDTPEKSVSDVMKEIKEEEGE*
Ga0104988_1076120	F031792	AGGAGG	MGYEPRLDDDIALGIEEEVEPIKCFRCSDELDEDEIVWADIEGQIVKEGNDTAWCVSCLPSEEESK*
Ga0104988_1076121	F023834	GGAG	MNKEYWLAKAELCRDLALIQIQQEETEKEAGMNLMRMTYALSMVDVYSEGQGENE*
Ga0104988_1076131	F026830	N/A	MAKGETIMPVPEGDITTTEILIPEVVPAVEEVEDDLPELS*