Scaffold Ga0104988_10568

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10568
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 18009
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (74.07%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036197	Metagenome	170	Y
F040586	Metagenome	161	N
F041187	Metagenome	160	Y
F052415	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1056821	F036197	N/A	MIHPVHGAKIATMELEAETDEKNGWTRYNPDTLSEPEAAPVNVLEVKRRRKVTTEEV*
Ga0104988_105683	F040586	N/A	MILQELGGAEWLRKQLDKNAKMPAKYYRRELDAPSKKEAND*
Ga0104988_105684	F041187	AGGA	MINKPDFATWSQANLAKFAEDAYAKLCEQDDRIQMLQCDLKTAIEAYRALTKE*
Ga0104988_105689	F052415	GGA	MKWILVIFMLIPGTSNQKKKDEYRCVRWAWTVDVYNRKVVCLEWQKVERK*